MOM6: Allow ALE boundary extrapolation behaviour to differ at initial…

…isation and in model run - NOAA-GFDL/MOM6@25989ad0b Allow ALE boundary extrapolation behaviour to differ at initialisation and in model run - NOAA-GFDL/MOM6@4058462f1 Refactoring density integrals for efficiency - NOAA-GFDL/MOM6@01b2ea9ba Document units of 34 real variables in vertFPmix
NOAA-GFDL · May 2, 2024 · d6746b0 · d6746b0
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diff --git a/ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/MOM_parameter_doc.all b/ice_ocean_SIS2/Baltic_ALE_z_offline_tracers/MOM_parameter_doc.all
@@ -550,6 +550,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ice_ocean_SIS2/Baltic_OM4_025/MOM_parameter_doc.all b/ice_ocean_SIS2/Baltic_OM4_025/MOM_parameter_doc.all
@@ -602,6 +602,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 PARTIAL_CELL_VELOCITY_REMAP = False !   [Boolean] default = False
                                 ! If true, use partial cell thicknesses at velocity points that are masked out
                                 ! where they extend below the shallower of the neighboring bathymetry for

diff --git a/ice_ocean_SIS2/Baltic_OM4_05/MOM_parameter_doc.all b/ice_ocean_SIS2/Baltic_OM4_05/MOM_parameter_doc.all
@@ -602,6 +602,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 PARTIAL_CELL_VELOCITY_REMAP = False !   [Boolean] default = False
                                 ! If true, use partial cell thicknesses at velocity points that are masked out
                                 ! where they extend below the shallower of the neighboring bathymetry for

diff --git a/ice_ocean_SIS2/OM4_025/MOM_parameter_doc.all b/ice_ocean_SIS2/OM4_025/MOM_parameter_doc.all
@@ -602,6 +602,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 PARTIAL_CELL_VELOCITY_REMAP = False !   [Boolean] default = False
                                 ! If true, use partial cell thicknesses at velocity points that are masked out
                                 ! where they extend below the shallower of the neighboring bathymetry for

diff --git a/ice_ocean_SIS2/OM4_05/MOM_parameter_doc.all b/ice_ocean_SIS2/OM4_05/MOM_parameter_doc.all
@@ -602,6 +602,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 PARTIAL_CELL_VELOCITY_REMAP = False !   [Boolean] default = False
                                 ! If true, use partial cell thicknesses at velocity points that are masked out
                                 ! where they extend below the shallower of the neighboring bathymetry for

diff --git a/ice_ocean_SIS2/OM_1deg/MOM_parameter_doc.all b/ice_ocean_SIS2/OM_1deg/MOM_parameter_doc.all
@@ -593,6 +593,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 PARTIAL_CELL_VELOCITY_REMAP = False !   [Boolean] default = False
                                 ! If true, use partial cell thicknesses at velocity points that are masked out
                                 ! where they extend below the shallower of the neighboring bathymetry for

diff --git a/ocean_only/CVmix_SCM_tests/cooling_only/EPBL/MOM_parameter_doc.all b/ocean_only/CVmix_SCM_tests/cooling_only/EPBL/MOM_parameter_doc.all
@@ -484,6 +484,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/CVmix_SCM_tests/cooling_only/KPP/MOM_parameter_doc.all b/ocean_only/CVmix_SCM_tests/cooling_only/KPP/MOM_parameter_doc.all
@@ -484,6 +484,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/CVmix_SCM_tests/mech_only/EPBL/MOM_parameter_doc.all b/ocean_only/CVmix_SCM_tests/mech_only/EPBL/MOM_parameter_doc.all
@@ -484,6 +484,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/CVmix_SCM_tests/mech_only/KPP/MOM_parameter_doc.all b/ocean_only/CVmix_SCM_tests/mech_only/KPP/MOM_parameter_doc.all
@@ -484,6 +484,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/CVmix_SCM_tests/skin_warming_wind/EPBL/MOM_parameter_doc.all b/ocean_only/CVmix_SCM_tests/skin_warming_wind/EPBL/MOM_parameter_doc.all
@@ -484,6 +484,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/CVmix_SCM_tests/skin_warming_wind/KPP/MOM_parameter_doc.all b/ocean_only/CVmix_SCM_tests/skin_warming_wind/KPP/MOM_parameter_doc.all
@@ -484,6 +484,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/CVmix_SCM_tests/wind_only/EPBL/MOM_parameter_doc.all b/ocean_only/CVmix_SCM_tests/wind_only/EPBL/MOM_parameter_doc.all
@@ -484,6 +484,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/CVmix_SCM_tests/wind_only/KPP/MOM_parameter_doc.all b/ocean_only/CVmix_SCM_tests/wind_only/KPP/MOM_parameter_doc.all
@@ -484,6 +484,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/SCM_idealized_hurricane/MOM_parameter_doc.all b/ocean_only/SCM_idealized_hurricane/MOM_parameter_doc.all
@@ -484,6 +484,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/adjustment2d/rho/MOM_parameter_doc.all b/ocean_only/adjustment2d/rho/MOM_parameter_doc.all
@@ -546,6 +546,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 PARTIAL_CELL_VELOCITY_REMAP = False !   [Boolean] default = False
                                 ! If true, use partial cell thicknesses at velocity points that are masked out
                                 ! where they extend below the shallower of the neighboring bathymetry for

diff --git a/ocean_only/adjustment2d/z/MOM_parameter_doc.all b/ocean_only/adjustment2d/z/MOM_parameter_doc.all
@@ -493,6 +493,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/flow_downslope/rho/MOM_parameter_doc.all b/ocean_only/flow_downslope/rho/MOM_parameter_doc.all
@@ -557,6 +557,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 PARTIAL_CELL_VELOCITY_REMAP = False !   [Boolean] default = False
                                 ! If true, use partial cell thicknesses at velocity points that are masked out
                                 ! where they extend below the shallower of the neighboring bathymetry for

diff --git a/ocean_only/flow_downslope/sigma/MOM_parameter_doc.all b/ocean_only/flow_downslope/sigma/MOM_parameter_doc.all
@@ -504,6 +504,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/flow_downslope/z/MOM_parameter_doc.all b/ocean_only/flow_downslope/z/MOM_parameter_doc.all
@@ -504,6 +504,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions

diff --git a/ocean_only/global_ALE/hycom/MOM_parameter_doc.all b/ocean_only/global_ALE/hycom/MOM_parameter_doc.all
@@ -592,6 +592,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 PARTIAL_CELL_VELOCITY_REMAP = False !   [Boolean] default = False
                                 ! If true, use partial cell thicknesses at velocity points that are masked out
                                 ! where they extend below the shallower of the neighboring bathymetry for

diff --git a/ocean_only/global_ALE/z/MOM_parameter_doc.all b/ocean_only/global_ALE/z/MOM_parameter_doc.all
@@ -534,6 +534,9 @@ REMAP_BOUND_INTERMEDIATE_VALUES = False !   [Boolean] default = False
 REMAP_BOUNDARY_EXTRAP = False   !   [Boolean] default = False
                                 ! If true, values at the interfaces of boundary cells are extrapolated instead
                                 ! of piecewise constant
+INIT_BOUNDARY_EXTRAP = False    !   [Boolean] default = False
+                                ! If true, values at the interfaces of boundary cells are extrapolated instead
+                                ! of piecewise constant during initialization.Defaults to REMAP_BOUNDARY_EXTRAP.
 REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231
                                 ! The vintage of the expressions and order of arithmetic to use for remapping.
                                 ! Values below 20190101 result in the use of older, less accurate expressions