Computing Higher-Order Co-occurrence patterns in microbial samples.
Can be easily installed using pip:
pip install hiorco
As simple as:
hiorco samples.tsv
You can download our example here: samples.tsv (data from the Home Microbiome Project), and check the documentation for more options and details:
hiorco -h
Daniel Machado, European Molecular Biology Laboratory (EMBL), 2019