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Lab value extraction

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jingsliu edited this page Jul 16, 2018 · 2 revisions

We adopted Valx: https://github.com/Tony-Hao/Valx to extract numerical lab and vital sign values from the note text. The author provided version can only be used by python 2. Modified version for Python 3 is available here. Additionally, we use SDTM terminology for lab names as a reference list. The dataProcess_LabExample.py script provides example codes to run the lab value extraction.

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