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@NakhlehLab

The Nakhleh Lab

Projects and software from Luay Nakhleh's group at Rice University

Popular repositories Loading

  1. PhyloNet PhyloNet Public

    Roff 18 1

  2. PhyNetPy PhyNetPy Public

    A python library for the simulation, analysis, and inference of phylogenetic networks

    Python 4

  3. MoTERNN MoTERNN Public

    Identifying mode of tumor evolution using recursive neural networks

    Python 3 2

  4. Polyphest Polyphest Public

    Fast Polyploid Phylogeny Estimation

    Python 3

  5. Phylovar Phylovar Public

    Phylovar is a phylogeny-aware SNV caller for single-cell sequencing data that scales up to millions of loci

    Python 2 1

  6. Maximal-Homologous-Groups Maximal-Homologous-Groups Public

    Python 2

Repositories

Showing 9 of 9 repositories
  • PhyNetPy Public

    A python library for the simulation, analysis, and inference of phylogenetic networks

    NakhlehLab/PhyNetPy’s past year of commit activity
    Python 4 MIT 0 1 0 Updated Mar 11, 2025
  • NakhlehLab.github.io Public

    Nakhleh Lab web site

    NakhlehLab/NakhlehLab.github.io’s past year of commit activity
    HTML 0 1 0 0 Updated Jan 30, 2025
  • PhyloNet Public
    NakhlehLab/PhyloNet’s past year of commit activity
    Roff 18 1 6 0 Updated Jun 26, 2024
  • Polyphest Public

    Fast Polyploid Phylogeny Estimation

    NakhlehLab/Polyphest’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Apr 4, 2024
  • Maximal-Homologous-Groups Public
    NakhlehLab/Maximal-Homologous-Groups’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Feb 1, 2024
  • MaCroDNA Public

    A high-accuracy tool for integrating scDNA-seq and scRNA-seq data

    NakhlehLab/MaCroDNA’s past year of commit activity
    Python 1 MIT 1 0 1 Updated Nov 12, 2023
  • Model-Misspecification Public
    NakhlehLab/Model-Misspecification’s past year of commit activity
    Python 0 0 0 0 Updated Nov 1, 2022
  • Phylovar Public

    Phylovar is a phylogeny-aware SNV caller for single-cell sequencing data that scales up to millions of loci

    NakhlehLab/Phylovar’s past year of commit activity
    Python 2 1 0 0 Updated May 15, 2022
  • MoTERNN Public

    Identifying mode of tumor evolution using recursive neural networks

    NakhlehLab/MoTERNN’s past year of commit activity
    Python 3 2 0 0 Updated May 15, 2022

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