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Normalizing Hi-C contact counts efficiently

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iced

The python module iced implements the ICE normalization of hic data

Depends on

python >= 2.7 numpy >= 1.16 scipy >= 0.19 sklearn pandas

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Normalizing Hi-C contact counts efficiently

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  • Python 97.8%
  • Cython 1.5%
  • Makefile 0.7%