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cajal

Visualization Tools for MRI

Named after Santiago Ramón y Cajal (1852-1934), he was awarded the Nobel Prize in Physiology or Medicine in 1906 together with Italian Camillo Golgi "in recognition of their work on the structure of the nervous system".

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Dependencies

Please see the requirements.txt file.

Install

This package uses setuptools and Makefiles.

I've made a workaround to deal with build dependencies of some requirements. So there are two requirements files: requirements.txt and pip-requirements.txt. The requirements.txt dependencies must be installed one by one, with:

make install_deps

The following command will install everything with all dependencies:

make install

If you already have the dependencies listed in requirements.txt installed, to install in your home directory, use:

python setup.py install --user

To install for all users on Unix/Linux:

python setup.py build
sudo python setup.py install

You can also install it in development mode with:

make develop

Development

Code

Github

You can check the latest sources with the command:

git clone https://www.github.com/Neurita/cajal.git

or if you have write privileges:

git clone git@github.com:Neurita/cajal.git

If you are going to create patches for this project, create a branch for it from the master branch.

The stable releases are tagged in the repository.

Testing

TODO

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Visualization Tools for brain MRI

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