Merge pull request #218614 from NixOS/python-updates

python-updates - major updates - 2023-02-27
NixOS · Mar 3, 2023 · 3e3c94b · 3e3c94b
2 parents d6d8348 + 48d1d42
commit 3e3c94b
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diff --git a/nixos/tests/matrix/mjolnir.nix b/nixos/tests/matrix/mjolnir.nix
@@ -107,7 +107,10 @@ import ../make-test-python.nix (
       client = { pkgs, ... }: {
         environment.systemPackages = [
           (pkgs.writers.writePython3Bin "create_management_room_and_invite_mjolnir"
-            { libraries = [ pkgs.python3Packages.matrix-nio ]; } ''
+            { libraries = with pkgs.python3Packages; [
+                matrix-nio
+              ] ++ matrix-nio.optional-dependencies.e2e;
+            } ''
             import asyncio
 
             from nio import (

diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix
@@ -99,11 +99,11 @@ stdenv.mkDerivation rec {
         setupPyBuildFlags = [ "--enable=load_extension" ];
       }))
       beautifulsoup4
-      cchardet
       css-parser
       cssselect
       python-dateutil
       dnspython
+      faust-cchardet
       feedparser
       html2text
       html5-parser

diff --git a/pkgs/applications/misc/electron-cash/default.nix b/pkgs/applications/misc/electron-cash/default.nix
@@ -38,7 +38,7 @@ python3Packages.buildPythonApplication rec {
     cython
     trezor
     keepkey
-    btchip
+    btchip-python
     hidapi
     pyopenssl
     pyscard

diff --git a/pkgs/applications/misc/electrum/default.nix b/pkgs/applications/misc/electrum/default.nix
@@ -71,7 +71,7 @@ python3.pkgs.buildPythonApplication {
     requests
     tlslite-ng
     # plugins
-    btchip
+    btchip-python
     ckcc-protocol
     keepkey
     trezor

diff --git a/pkgs/applications/misc/electrum/grs.nix b/pkgs/applications/misc/electrum/grs.nix
@@ -54,7 +54,7 @@ python3.pkgs.buildPythonApplication {
     requests
     tlslite-ng
     # plugins
-    btchip
+    btchip-python
     ckcc-protocol
     keepkey
     trezor

diff --git a/pkgs/applications/misc/electrum/ltc.nix b/pkgs/applications/misc/electrum/ltc.nix
@@ -71,7 +71,7 @@ python3.pkgs.buildPythonApplication {
     requests
     tlslite-ng
     # plugins
-    btchip
+    btchip-python
     ckcc-protocol
     keepkey
     trezor

diff --git a/pkgs/applications/misc/privacyidea/default.nix b/pkgs/applications/misc/privacyidea/default.nix
@@ -26,7 +26,7 @@ let
         src = self.fetchPypi {
           pname = "Flask-Migrate";
           inherit version;
-          sha256 = "ae2f05671588762dd83a21d8b18c51fe355e86783e24594995ff8d7380dffe38";
+          hash = "sha256-ri8FZxWIdi3YOiHYsYxR/jVehng+JFlJlf+Nc4Df/jg=";
         };
       });
       flask-sqlalchemy = super.flask-sqlalchemy.overridePythonAttrs (old: rec {
@@ -43,7 +43,7 @@ let
         version = "1.0.1";
         src = old.src.override {
           inherit version;
-          sha256 = "6c80b1e5ad3665290ea39320b91e1be1e0d5f60652b964a3070216de83d2e47c";
+          hash = "sha256-bICx5a02ZSkOo5MguR4b4eDV9gZSuWSjBwIW3oPS5Hw=";
         };
         nativeCheckInputs = old.nativeCheckInputs ++ (with self; [
           requests
@@ -55,18 +55,18 @@ let
         version = "2.11.3";
         src = old.src.override {
           inherit version;
-          sha256 = "sha256-ptWEM94K6AA0fKsfowQ867q+i6qdKeZo8cdoy4ejM8Y=";
+          hash = "sha256-ptWEM94K6AA0fKsfowQ867q+i6qdKeZo8cdoy4ejM8Y=";
         };
         patches = [
           # python 3.10 compat fixes. In later upstream releases, but these
           # are not compatible with flask 1 which we need here :(
           (fetchpatch {
             url = "https://github.com/thmo/jinja/commit/1efb4cc918b4f3d097c376596da101de9f76585a.patch";
-            sha256 = "sha256-GFaSvYxgzOEFmnnDIfcf0ImScNTh1lR4lxt2Uz1DYdU=";
+            hash = "sha256-GFaSvYxgzOEFmnnDIfcf0ImScNTh1lR4lxt2Uz1DYdU=";
           })
           (fetchpatch {
             url = "https://github.com/mkrizek/jinja/commit/bd8bad37d1c0e2d8995a44fd88e234f5340afec5.patch";
-            sha256 = "sha256-Uow+gaO+/dH6zavC0X/SsuMAfhTLRWpamVlL87DXDRA=";
+            hash = "sha256-Uow+gaO+/dH6zavC0X/SsuMAfhTLRWpamVlL87DXDRA=";
             excludes = [ "CHANGES.rst" ];
           })
         ];
@@ -76,21 +76,21 @@ let
         version = "2.0.1";
         src = old.src.override {
           inherit version;
-          sha256 = "sha256-WUxngH+xYjizDES99082wCzfItHIzake+KDtjav1Ygo=";
+          hash = "sha256-WUxngH+xYjizDES99082wCzfItHIzake+KDtjav1Ygo=";
         };
       });
       itsdangerous = super.itsdangerous.overridePythonAttrs (old: rec {
         version = "1.1.0";
         src = old.src.override {
           inherit version;
-          sha256 = "321b033d07f2a4136d3ec762eac9f16a10ccd60f53c0c91af90217ace7ba1f19";
+          hash = "sha256-MhsDPQfypBNtPsdi6snxahDM1g9TwMka+QIXrOe6Hxk=";
         };
       });
       flask = super.flask.overridePythonAttrs (old: rec {
         version = "1.1.4";
         src = old.src.override {
           inherit version;
-          sha256 = "0fbeb6180d383a9186d0d6ed954e0042ad9f18e0e8de088b2b419d526927d196";
+          hash = "sha256-D762GA04OpGG0NbtlU4AQq2fGODo3giLK0GdUmkn0ZY=";
         };
       });
       sqlsoup = super.sqlsoup.overrideAttrs ({ meta ? {}, ... }: {
@@ -100,7 +100,7 @@ let
         version = "7.1.2";
         src = old.src.override {
           inherit version;
-          sha256 = "d2b5255c7c6349bc1bd1e59e08cd12acbbd63ce649f2588755783aa94dfb6b1a";
+          hash = "sha256-0rUlXHxjSbwb0eWeCM0SrLvWPOZJ8liHVXg6qU37axo=";
         };
       });
       # Now requires `lingua` as check input that requires a newer `click`,
@@ -165,7 +165,7 @@ python3'.pkgs.buildPythonPackage rec {
     owner = pname;
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-SYXw8PBCb514v3rcy15W/vZS5JyMsu81D2sJmviLRtw=";
+    hash = "sha256-SYXw8PBCb514v3rcy15W/vZS5JyMsu81D2sJmviLRtw=";
     fetchSubmodules = true;
   };
 

diff --git a/pkgs/applications/misc/pytrainer/default.nix b/pkgs/applications/misc/pytrainer/default.nix
@@ -1,5 +1,5 @@
 { lib
-, python3
+, python310
 , fetchFromGitHub
 , gdk-pixbuf
 , gnome
@@ -17,11 +17,19 @@
 }:
 
 let
-  python = python3.override {
+  python = python310.override {
     packageOverrides = (self: super: {
       matplotlib = super.matplotlib.override {
         enableGtk3 = true;
       };
+      sqlalchemy = super.sqlalchemy.overridePythonAttrs (old: rec {
+        version = "1.4.46";
+        src = self.fetchPypi {
+          pname = "SQLAlchemy";
+          inherit version;
+          hash = "sha256-aRO4JH2KKS74MVFipRkx4rQM6RaB8bbxj2lwRSAMSjA=";
+        };
+      });
     });
   };
 in python.pkgs.buildPythonApplication rec {
@@ -77,7 +85,7 @@ in python.pkgs.buildPythonApplication rec {
       TZ=Europe/Kaliningrad \
       LC_ALL=en_US.UTF-8 \
       xvfb-run -s '-screen 0 800x600x24' \
-      ${python3.interpreter} setup.py test
+      ${python.interpreter} setup.py test
   '';
 
   meta = with lib; {

diff --git a/pkgs/applications/networking/instant-messengers/matrix-commander/default.nix b/pkgs/applications/networking/instant-messengers/matrix-commander/default.nix
@@ -51,7 +51,7 @@ buildPythonApplication rec {
     dbus-python
     pyxdg
     python-olm
-  ];
+  ] ++ matrix-nio.optional-dependencies.e2e;
 
   meta = with lib; {
     description = "Simple but convenient CLI-based Matrix client app for sending and receiving";

diff --git a/pkgs/applications/networking/instant-messengers/mirage/default.nix b/pkgs/applications/networking/instant-messengers/mirage/default.nix
@@ -66,7 +66,7 @@ mkDerivation rec {
     watchgod
     dbus-python
     matrix-nio
-  ];
+  ] ++ matrix-nio.optional-dependencies.e2e;
 
   qmakeFlags = [
     "PREFIX=${placeholder "out"}"

diff --git a/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix b/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix
@@ -34,7 +34,9 @@ buildPythonApplication rec {
     peewee
     prompt-toolkit
     setuptools
-  ] ++ lib.optionals enableDbusUi [
+  ]
+  ++ matrix-nio.optional-dependencies.e2e
+  ++ lib.optionals enableDbusUi [
       dbus-python
       notify2
       pygobject3

diff --git a/pkgs/applications/networking/irc/weechat/scripts/weechat-matrix/default.nix b/pkgs/applications/networking/irc/weechat/scripts/weechat-matrix/default.nix
@@ -50,7 +50,7 @@ in buildPythonPackage {
     matrix-nio
     aiohttp
     requests
-  ];
+  ] ++ matrix-nio.optional-dependencies.e2e;
 
   passthru.scripts = [ "matrix.py" ];
 

diff --git a/pkgs/applications/networking/opsdroid/default.nix b/pkgs/applications/networking/opsdroid/default.nix
@@ -22,7 +22,7 @@ python3Packages.buildPythonPackage rec {
     aiohttp matrix-api-async aioredis aiosqlite arrow pyyaml motor regex
     mattermostdriver setuptools voluptuous ibm-watson tailer multidict
     watchgod get-video-properties appdirs bitstring matrix-nio
-  ];
+  ] ++ matrix-nio.optional-dependencies.e2e;
 
   passthru.python = python3Packages.python;
 

diff --git a/pkgs/applications/video/catt/default.nix b/pkgs/applications/video/catt/default.nix
@@ -21,7 +21,7 @@ let
         version = "7.1.2";
         src = oldAttrs.src.override {
           inherit version;
-          sha256 = "06kbzd6sjfkqan3miwj9wqyddfxc2b6hi7p5s4dvqjb3gif2bdfj";
+          hash = "sha256-0rUlXHxjSbwb0eWeCM0SrLvWPOZJ8liHVXg6qU37axo=";
         };
       });
 
@@ -40,6 +40,7 @@ with py.pkgs;
 buildPythonApplication rec {
   pname = "catt";
   version = "0.12.7";
+  format = "setuptools";
 
   src = fetchPypi {
     inherit pname version;

diff --git a/pkgs/applications/virtualization/docker/compose_1.nix b/pkgs/applications/virtualization/docker/compose_1.nix
@@ -13,7 +13,7 @@ buildPythonApplication rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-TIzZ0h0jdBJ5PRi9MxEASe6a+Nqz/iwhO70HM5WbCbc=";
+    hash = "sha256-TIzZ0h0jdBJ5PRi9MxEASe6a+Nqz/iwhO70HM5WbCbc=";
   };
 
   # lots of networking and other fails

diff --git a/pkgs/development/compilers/ghc/8.10.7.nix b/pkgs/development/compilers/ghc/8.10.7.nix
@@ -188,6 +188,14 @@ stdenv.mkDerivation (rec {
   outputs = [ "out" "doc" ];
 
   patches = [
+    # Fix docs build with sphinx >= 6.0
+    # https://gitlab.haskell.org/ghc/ghc/-/issues/22766
+    (fetchpatch {
+      name = "ghc-docs-sphinx-6.0.patch";
+      url = "https://gitlab.haskell.org/ghc/ghc/-/commit/10e94a556b4f90769b7fd718b9790d58ae566600.patch";
+      sha256 = "0kmhfamr16w8gch0lgln2912r8aryjky1hfcda3jkcwa5cdzgjdv";
+    })
+
     # See upstream patch at
     # https://gitlab.haskell.org/ghc/ghc/-/merge_requests/4885. Since we build
     # from source distributions, the auto-generated configure script needs to be

diff --git a/pkgs/development/compilers/ghc/8.8.4.nix b/pkgs/development/compilers/ghc/8.8.4.nix
@@ -175,6 +175,10 @@ stdenv.mkDerivation (rec {
   outputs = [ "out" "doc" ];
 
   patches = [
+    # Fix docs build with sphinx >= 6.0
+    # https://gitlab.haskell.org/ghc/ghc/-/issues/22766
+    ./ghc-8.8.4-sphinx-6.0.patch
+
     # See upstream patch at
     # https://gitlab.haskell.org/ghc/ghc/-/merge_requests/4885. Since we build
     # from source distributions, the auto-generated configure script needs to be

diff --git a/pkgs/development/compilers/ghc/9.0.2.nix b/pkgs/development/compilers/ghc/9.0.2.nix
@@ -188,6 +188,13 @@ stdenv.mkDerivation (rec {
   outputs = [ "out" "doc" ];
 
   patches = [
+    # Fix docs build with sphinx >= 6.0
+    # https://gitlab.haskell.org/ghc/ghc/-/issues/22766
+    (fetchpatch {
+      name = "ghc-docs-sphinx-6.0.patch";
+      url = "https://gitlab.haskell.org/ghc/ghc/-/commit/10e94a556b4f90769b7fd718b9790d58ae566600.patch";
+      sha256 = "0kmhfamr16w8gch0lgln2912r8aryjky1hfcda3jkcwa5cdzgjdv";
+    })
     # fix hyperlinked haddock sources: https://github.com/haskell/haddock/pull/1482
     (fetchpatch {
       url = "https://patch-diff.githubusercontent.com/raw/haskell/haddock/pull/1482.patch";

diff --git a/pkgs/development/compilers/ghc/9.2.4.nix b/pkgs/development/compilers/ghc/9.2.4.nix
@@ -188,6 +188,13 @@ stdenv.mkDerivation (rec {
   outputs = [ "out" "doc" ];
 
   patches = [
+    # Fix docs build with sphinx >= 6.0
+    # https://gitlab.haskell.org/ghc/ghc/-/issues/22766
+    (fetchpatch {
+      name = "ghc-docs-sphinx-6.0.patch";
+      url = "https://gitlab.haskell.org/ghc/ghc/-/commit/10e94a556b4f90769b7fd718b9790d58ae566600.patch";
+      sha256 = "0kmhfamr16w8gch0lgln2912r8aryjky1hfcda3jkcwa5cdzgjdv";
+    })
     # fix hyperlinked haddock sources: https://github.com/haskell/haddock/pull/1482
     (fetchpatch {
       url = "https://patch-diff.githubusercontent.com/raw/haskell/haddock/pull/1482.patch";

diff --git a/pkgs/development/compilers/ghc/9.2.5.nix b/pkgs/development/compilers/ghc/9.2.5.nix
@@ -188,6 +188,13 @@ stdenv.mkDerivation (rec {
   outputs = [ "out" "doc" ];
 
   patches = [
+    # Fix docs build with sphinx >= 6.0
+    # https://gitlab.haskell.org/ghc/ghc/-/issues/22766
+    (fetchpatch {
+      name = "ghc-docs-sphinx-6.0.patch";
+      url = "https://gitlab.haskell.org/ghc/ghc/-/commit/10e94a556b4f90769b7fd718b9790d58ae566600.patch";
+      sha256 = "0kmhfamr16w8gch0lgln2912r8aryjky1hfcda3jkcwa5cdzgjdv";
+    })
     # fix hyperlinked haddock sources: https://github.com/haskell/haddock/pull/1482
     (fetchpatch {
       url = "https://patch-diff.githubusercontent.com/raw/haskell/haddock/pull/1482.patch";

diff --git a/pkgs/development/compilers/ghc/9.2.6.nix b/pkgs/development/compilers/ghc/9.2.6.nix
@@ -188,6 +188,13 @@ stdenv.mkDerivation (rec {
   outputs = [ "out" "doc" ];
 
   patches = [
+    # Fix docs build with sphinx >= 6.0
+    # https://gitlab.haskell.org/ghc/ghc/-/issues/22766
+    (fetchpatch {
+      name = "ghc-docs-sphinx-6.0.patch";
+      url = "https://gitlab.haskell.org/ghc/ghc/-/commit/10e94a556b4f90769b7fd718b9790d58ae566600.patch";
+      sha256 = "0kmhfamr16w8gch0lgln2912r8aryjky1hfcda3jkcwa5cdzgjdv";
+    })
     # fix hyperlinked haddock sources: https://github.com/haskell/haddock/pull/1482
     (fetchpatch {
       url = "https://patch-diff.githubusercontent.com/raw/haskell/haddock/pull/1482.patch";

diff --git a/pkgs/development/compilers/ghc/9.4.2.nix b/pkgs/development/compilers/ghc/9.4.2.nix
@@ -189,6 +189,15 @@ stdenv.mkDerivation (rec {
 
   outputs = [ "out" "doc" ];
 
+  patches = [
+    # Fix docs build with sphinx >= 6.0
+    # https://gitlab.haskell.org/ghc/ghc/-/issues/22766
+    (fetchpatch {
+      name = "ghc-docs-sphinx-6.0.patch";
+      url = "https://gitlab.haskell.org/ghc/ghc/-/commit/10e94a556b4f90769b7fd718b9790d58ae566600.patch";
+      sha256 = "0kmhfamr16w8gch0lgln2912r8aryjky1hfcda3jkcwa5cdzgjdv";
+    })
+  ];
 
   postPatch = "patchShebangs .";
 

diff --git a/pkgs/development/compilers/ghc/9.4.3.nix b/pkgs/development/compilers/ghc/9.4.3.nix
@@ -189,6 +189,15 @@ stdenv.mkDerivation (rec {
 
   outputs = [ "out" "doc" ];
 
+  patches = [
+    # Fix docs build with sphinx >= 6.0
+    # https://gitlab.haskell.org/ghc/ghc/-/issues/22766
+    (fetchpatch {
+      name = "ghc-docs-sphinx-6.0.patch";
+      url = "https://gitlab.haskell.org/ghc/ghc/-/commit/10e94a556b4f90769b7fd718b9790d58ae566600.patch";
+      sha256 = "0kmhfamr16w8gch0lgln2912r8aryjky1hfcda3jkcwa5cdzgjdv";
+    })
+  ];
 
   postPatch = "patchShebangs .";
 

diff --git a/pkgs/development/compilers/ghc/9.4.4.nix b/pkgs/development/compilers/ghc/9.4.4.nix
@@ -198,6 +198,14 @@ stdenv.mkDerivation (rec {
       extraPrefix = "libraries/Cabal/";
       sha256 = "sha256-yRQ6YmMiwBwiYseC5BsrEtDgFbWvst+maGgDtdD0vAY=";
     })
+
+    # Fix docs build with sphinx >= 6.0
+    # https://gitlab.haskell.org/ghc/ghc/-/issues/22766
+    (fetchpatch {
+      name = "ghc-docs-sphinx-6.0.patch";
+      url = "https://gitlab.haskell.org/ghc/ghc/-/commit/10e94a556b4f90769b7fd718b9790d58ae566600.patch";
+      sha256 = "0kmhfamr16w8gch0lgln2912r8aryjky1hfcda3jkcwa5cdzgjdv";
+    })
   ];
 
   postPatch = "patchShebangs .";

diff --git a/pkgs/development/compilers/ghc/ghc-8.8.4-sphinx-6.0.patch b/pkgs/development/compilers/ghc/ghc-8.8.4-sphinx-6.0.patch
@@ -0,0 +1,13 @@
+diff --git a/docs/users_guide/ghc_config.py.in b/docs/users_guide/ghc_config.py.in
+index 2670ad3cf1..d2f9d85c31 100644
+--- a/docs/users_guide/ghc_config.py.in
++++ b/docs/users_guide/ghc_config.py.in
+@@ -1,6 +1,6 @@
+ extlinks = {
+-    'ghc-ticket': ('https://gitlab.haskell.org/ghc/ghc/issues/%s', 'Issue #'),
+-    'ghc-wiki': ('https://gitlab.haskell.org/ghc/ghc/wikis/%s', 'GHC Wiki'),
++    'ghc-ticket': ('https://gitlab.haskell.org/ghc/ghc/issues/%s', 'Issue %s'),
++    'ghc-wiki': ('https://gitlab.haskell.org/ghc/ghc/wikis/%s', 'GHC Wiki %s'),
+ }
+
+ libs_base_uri = '../libraries'