To install, download the model using either git or by downloading and extracting a zip file. Then open a terminal and enter the model's directory. Run
pipenv install
to install the model's dependencies in a virtual environment. (The only dependency is numpy at the time of writing.) The virtual environment can be entered with
pipenv shell
To run, enter the virtual environment as above, then on linux or mac:
PYTHONPATH=. python edu/uf/main/Model.py
or on windows:
set PYTHONPATH=.
python edu/uf/main/Model.py
Henrique de Assis Ribeiro, Laboratory for Systems Medicine, College of Medicine, University of Florida
Reinhard Laubenbacher, Laboratory for Systems Medicine, College of Medicine, University of Florida