Development #92
Merged
Development #92
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Owner
NuttyLogic
commented
Jul 7, 2020
NuttyLogic
commented
- bwa, wgsim, and htslib are now stored in separate repositories
- pysam bam compression has been removed and replaced with a custom htslib implementation
git-subtree-dir: BSBolt/External/BWA git-subtree-split: 246500f
git-subtree-dir: BSBolt/External/WGSIM git-subtree-split: c05f4a593fba4728bc76edcc2540e7151c8e3d08
git-subtree-dir: BSBolt/External/HTSLIB git-subtree-split: bf8ebc2c28670bade749de93d6b1662161c1aa85
15f200e BAM Streaming git-subtree-dir: BSBolt/External/HTSLIB git-subtree-split: 15f200ec048c0ce48f0e2b26f165c185645db0c1
50fc590 Stream BAM Return Fix git-subtree-dir: BSBolt/External/HTSLIB git-subtree-split: 50fc590912d51210453c3319a9b567fedc7a500f
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.