Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How to construct a comparision between population simulations? #380

Open
wangwei1619 opened this issue Sep 10, 2019 · 9 comments

Comments

@wangwei1619
Copy link

commented Sep 10, 2019

Hi, all,

I have three simulations for three kinds of formations of the same molecule on one defined population, but I can't compare them or put them in one plot. Do I neglect something?

image
image

@wangwei1619

This comment has been minimized.

Copy link
Author

commented Sep 10, 2019

The version is PK-Sim 8.0

@msevestre

This comment has been minimized.

Copy link
Member

commented Sep 10, 2019

@wangwei1619 What parameters did you select in Output and Population Parameters? Can you show us a screenshot?

@wangwei1619

This comment has been minimized.

Copy link
Author

commented Sep 11, 2019

I just select plasma concentration in 'Output' and no parameter in 'Population Parameters' like this
image
image
, because I just want to put concentration versus time profiles together, like this:
image
(Manuel Ibarra, et al. 2018.)

@msevestre

This comment has been minimized.

Copy link
Member

commented Sep 11, 2019

Is there a way you can attach the project so that I can check what's going on?

@wangwei1619

This comment has been minimized.

Copy link
Author

commented Sep 11, 2019

Here is the link: https://github.com/wangwei1619/Learnin-PBPK-PK-Sim
I wish I make this link right~

@wangwei1619

This comment has been minimized.

Copy link
Author

commented Sep 12, 2019

Hi, @msevestre .Thanks for your zealous concern on my question. Is there anything wrong in my work?

@msevestre

This comment has been minimized.

Copy link
Member

commented Sep 12, 2019

Hi @wangwei1619
The comparison is not setup properly. You did not define any population parameters that you want to group by. More specifically, you want to split your data "per simulation" in your case

So select the simulation name as a grouping parameter like so
image

and group by simulation name like so
image

You can also split by pane for example
image

or by gender
image

The sky is the limit. If you do not tell PK-Sim how you want to split your data, it will just aggregate all the data as one dataset and calculate the mean above all simulations. Useful sometimes, but now what you want

@wangwei1619

This comment has been minimized.

Copy link
Author

commented Sep 13, 2019

Thank you so much! It hides there!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
2 participants
You can’t perform that action at this time.