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First pass at PyXRF workflow #2229

Merged
merged 5 commits into from
Mar 15, 2022
Merged

First pass at PyXRF workflow #2229

merged 5 commits into from
Mar 15, 2022

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psavery
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@psavery psavery commented Mar 8, 2022

This first pass includes most of the essential steps, including making
the HDF5 files from scan numbers, creating the csv log file,
processing the projections, creating a single HDF5 file at the end,
and extracting the output from that HDF5 file for Tomviz to use.

The various dialogs allow users to choose options, including selecting
which scans to use.

A video example is provided below.

pyxrf_workflow.mp4

@psavery psavery force-pushed the pyxrf branch 3 times, most recently from bda986d to a7edd1c Compare March 8, 2022 22:20
They may not be present in some datasets. Make them optional.

Signed-off-by: Patrick Avery <patrick.avery@kitware.com>
This dialog allows the user to select items from a list. It is
implemented with a single column QTableWidget that contains one
checkbox for each item.

Signed-off-by: Patrick Avery <patrick.avery@kitware.com>
The output widget is hidden by default, to maintain the previous
behavior. But it will be used in the PyXRF workflow to display
the output from various steps.

Signed-off-by: Patrick Avery <patrick.avery@kitware.com>
This first pass includes most of the essential steps, including making
the HDF5 files from scan numbers, creating the csv log file,
processing the projections, creating a single HDF5 file at the end,
and extracting the output from that HDF5 file for Tomviz to use.

The various dialogs allow users to choose options, including selecting
which scans to use.

Signed-off-by: Patrick Avery <patrick.avery@kitware.com>
@psavery psavery marked this pull request as ready for review March 15, 2022 19:46
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LGTM

@cjh1 cjh1 merged commit 8e5d9fe into OpenChemistry:master Mar 15, 2022
@psavery psavery deleted the pyxrf branch March 16, 2022 00:32
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2 participants