Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

auto-detect profile mass spectra #26

Closed
Mailaender opened this issue Dec 24, 2017 · 1 comment
Closed

auto-detect profile mass spectra #26

Mailaender opened this issue Dec 24, 2017 · 1 comment
Assignees

Comments

@Mailaender
Copy link
Member

Mailaender commented Dec 24, 2017

At least the Bruker flex file format #18 contains the information and we also parse and save it:

[...]

// MASS SPECTRUM (CENTROID OR PROFILE)
value = extractValue(ACQU_DATATYPE, line);
if(value != null) {
	if(value.contains("CONTINUOUS")) {
		massSpectrumType = 1; // profile
	} else {
		massSpectrumType = 0; // centroid
	}
}

[...]

It is exposed in the interface IRegularMassSpectrum. So in my eyes the preference can be obsoleted and there is also no need for writing specialized MALDI-TOF MS spectrum views like ProfileMassSpectrumViewTOF.java

@Mailaender Mailaender self-assigned this Dec 24, 2017
@Mailaender Mailaender added this to the 1.3.0 "Dalton" milestone Dec 24, 2017
@Mailaender
Copy link
Member Author

Mailaender commented Dec 24, 2017

See upstream https://bugs.eclipse.org/bugs/show_bug.cgi?id=529180 ☑️

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant