segfault when loading dataset with certain number of images #580
Comments
mribbons
added a commit
to mribbons/OpenDroneMap
that referenced
this issue
May 19, 2017
Issue was caused by data in ImageUniqueID tag, even though data is populated. By only reading the values we need from metadata we avoid the issue in pyexiv2. Should also improve performance. stacktrace of error: .#0 strlen () at ../sysdeps/x86_64/strlen.S:106 .OpenDroneMap#1 0x00007fffdb154ce7 in exiv2wrapper::ExifTag::ExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Exiv2::Exifdatum*, Exiv2::ExifData*, Exiv2::ByteOrder) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#2 0x00007fffdb154eb4 in exiv2wrapper::Image::getExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#3 0x00007fffdb15f3e6 in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<exiv2wrapper::ExifTag const (exiv2wrapper::Image::*)(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >), boost::python::default_call_policies, boost::mpl::vector3<exiv2wrapper::ExifTag const, exiv2wrapper::Image&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >::operator()(_object*, _object*) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#4 0x00007ffff52845cd in boost::python::objects::function::call(_object*, _object*) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#5 0x00007ffff52847c8 in ?? () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#6 0x00007ffff528c823 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#7 0x00007fffdb15dd63 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<Exiv2::BasicError<char>, void (*)(Exiv2::BasicError<char> const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(Exiv2::BasicError<char> const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#8 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#9 0x00007ffff5d01ab8 in boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>::operator()(boost::python::detail::exception_handler const&, boost::function0<void> const&, void (*)(ecto::except::NullTendril const&)) const () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#10 0x00007ffff5d0099f in bool boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> >::operator()<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&> >(boost::_bi::type<bool>, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>&, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&>&, long) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#11 0x00007ffff5cffbe7 in bool boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >::operator()<boost::python::detail::exception_handler, boost::function0<void> >(boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#12 0x00007ffff5cfeb54 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#13 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 ...
mribbons
added a commit
to mribbons/OpenDroneMap
that referenced
this issue
May 19, 2017
Issue was caused by data in ImageUniqueID tag, even though data is populated. By only reading the values we need from metadata we avoid the issue in pyexiv2. Should also improve performance. stacktrace of error: .#0 strlen () at ../sysdeps/x86_64/strlen.S:106 .OpenDroneMap#1 0x00007fffdb154ce7 in exiv2wrapper::ExifTag::ExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Exiv2::Exifdatum*, Exiv2::ExifData*, Exiv2::ByteOrder) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#2 0x00007fffdb154eb4 in exiv2wrapper::Image::getExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#3 0x00007fffdb15f3e6 in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<exiv2wrapper::ExifTag const (exiv2wrapper::Image::*)(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >), boost::python::default_call_policies, boost::mpl::vector3<exiv2wrapper::ExifTag const, exiv2wrapper::Image&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >::operator()(_object*, _object*) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#4 0x00007ffff52845cd in boost::python::objects::function::call(_object*, _object*) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#5 0x00007ffff52847c8 in ?? () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#6 0x00007ffff528c823 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#7 0x00007fffdb15dd63 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<Exiv2::BasicError<char>, void (*)(Exiv2::BasicError<char> const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(Exiv2::BasicError<char> const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#8 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#9 0x00007ffff5d01ab8 in boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>::operator()(boost::python::detail::exception_handler const&, boost::function0<void> const&, void (*)(ecto::except::NullTendril const&)) const () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#10 0x00007ffff5d0099f in bool boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> >::operator()<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&> >(boost::_bi::type<bool>, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>&, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&>&, long) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#11 0x00007ffff5cffbe7 in bool boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >::operator()<boost::python::detail::exception_handler, boost::function0<void> >(boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#12 0x00007ffff5cfeb54 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#13 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 ...
mribbons
added a commit
to mribbons/OpenDroneMap
that referenced
this issue
May 19, 2017
Resolves OpenDroneMap#580 Issue was caused by attempting to read data in ImageUniqueID tag, even though data is populated. By only reading the values we need from metadata we avoid the issue in pyexiv2. Should also improve performance. stacktrace of error: .#0 strlen () at ../sysdeps/x86_64/strlen.S:106 .OpenDroneMap#1 0x00007fffdb154ce7 in exiv2wrapper::ExifTag::ExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Exiv2::Exifdatum*, Exiv2::ExifData*, Exiv2::ByteOrder) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#2 0x00007fffdb154eb4 in exiv2wrapper::Image::getExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#3 0x00007fffdb15f3e6 in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<exiv2wrapper::ExifTag const (exiv2wrapper::Image::*)(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >), boost::python::default_call_policies, boost::mpl::vector3<exiv2wrapper::ExifTag const, exiv2wrapper::Image&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >::operator()(_object*, _object*) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#4 0x00007ffff52845cd in boost::python::objects::function::call(_object*, _object*) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#5 0x00007ffff52847c8 in ?? () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#6 0x00007ffff528c823 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#7 0x00007fffdb15dd63 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<Exiv2::BasicError<char>, void (*)(Exiv2::BasicError<char> const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(Exiv2::BasicError<char> const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#8 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#9 0x00007ffff5d01ab8 in boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>::operator()(boost::python::detail::exception_handler const&, boost::function0<void> const&, void (*)(ecto::except::NullTendril const&)) const () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#10 0x00007ffff5d0099f in bool boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> >::operator()<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&> >(boost::_bi::type<bool>, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>&, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&>&, long) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#11 0x00007ffff5cffbe7 in bool boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >::operator()<boost::python::detail::exception_handler, boost::function0<void> >(boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#12 0x00007ffff5cfeb54 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#13 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 ...
mgctech-gk
pushed a commit
to mgctech-gk/OpenDroneMap
that referenced
this issue
Jul 15, 2017
* Partial restart of opensfm * Added Odm25dMeshing module, CGAL read Ply file example * Proof of concept 2.5D colored mesh working. Still need to do smoothing / filtering * Add BigTIFF creation option to odm_orthophoto * Smoothing improvements (work in progress) * Tweaked a few parameters * Docker packages.Dockerfile Updates Moved to phusion/baseimage Removed .git folder in docker image Also removed .git from the COPY in Dockerfile Dropped Test files and git info from Dockerfile * Ignore updates * Add baseline code for DEM gen * Add all options to BIGTIFF param * Add gdaladdo to build overviews * Docker updates * Docker Improvements * jet_smooth_points working * bilateral smoothing working * Dockerfile updates * Last tweaks, ready for testing * Added support for resume from opensfm reconstruction stages. * Added support for resume from opensfm reconstruction stages. * Started modifying cmake build rules to build 25dmesh module * Got odm_25dmeshing to compile under OpenDroneMap env * Integrated 2.5D mesh into pipeline. Still needs testing * Fixed path bug * Fixed incorrect filename. * Cleaned up dockerfile, updated core2.dockerfile, removed unused packages.dockerfile (OpenDroneMap#536) * Add DEM generator to control script * Add reinstall and uninstall options to configuration script * Add reinstall instructions to README * Update LAS conversion to JSON * Expose DEM gen options to command line * Removed odm_texturing, cleaned up 2.5d generation algorithm, added params in ODM pipeline * Added max_vertex_25d parameter, added TBB library support for parallel execution, cleanup * Added --skip-25dmesh parameter * Increased lower limit for wlop * Added overflow check in normalsDirectionCount * Changed default wlop iterations value * Add LAS writer forward option * Added libgmp-dev libmpfr-dev dependencies * Started improving 2.5d mesh generation to fix seg faults in mvs texturing * z-occlusion filtering, removed outlier removal, still need testing * Removed max-vertex-25d parameter * Grid upsampling, much faster processing * Re-added outlier removal code * Polyhedron construction, refining, simplification * Readded outlier removal parameter, removed tinyply dependency, mesh refinement, edge collapse * Update Version * Remove ref to packages.Dockerfile in README * Parameter tweaks * Re-add OpenSfM to benchmarking * Added details for installing Grass version Clarified that code works only with Grass 7 or higher version * Linked contour map generation with ODM DEM model This update links the grass contour code to the ODM project DEM model generated with PDAL, which is located in the project folder /odm_georeferencing/odm_georeferencing_model_dem.tif. It also enables contour and relief maps to be created across regions as it ignores the Location PROJ_INFO with the -o flag. * Clarifies GRASS version More detail for GRASS compile and install and links code to ODM project DEM file. * Give proper warning when resize is equal to image size. * Remove outdated instructions from readme * Updated pdal matrix transform pipeline, updated PDAL version * Use custom MVS repo * Update MVS Texturing * Update to version 0.3.1 * Removed extract true from filters.pmf * added skip-resize flag to possible arguments and added its implementation * added copy method to io.py * replaced shutil.copyfile with io.copy * Temporarily changed opensfm-processes to 1 * Link to "Viewing results" wiki page from README.md * Added warning when an orthophoto cannot be generated due to excessive resolution * Avoid crash in pyexiv2 with some image files. Resolves OpenDroneMap#580 Issue was caused by attempting to read data in ImageUniqueID tag, even though data is populated. By only reading the values we need from metadata we avoid the issue in pyexiv2. Should also improve performance. stacktrace of error: .#0 strlen () at ../sysdeps/x86_64/strlen.S:106 .#1 0x00007fffdb154ce7 in exiv2wrapper::ExifTag::ExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Exiv2::Exifdatum*, Exiv2::ExifData*, Exiv2::ByteOrder) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .#2 0x00007fffdb154eb4 in exiv2wrapper::Image::getExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .#3 0x00007fffdb15f3e6 in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<exiv2wrapper::ExifTag const (exiv2wrapper::Image::*)(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >), boost::python::default_call_policies, boost::mpl::vector3<exiv2wrapper::ExifTag const, exiv2wrapper::Image&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >::operator()(_object*, _object*) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#4 0x00007ffff52845cd in boost::python::objects::function::call(_object*, _object*) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#5 0x00007ffff52847c8 in ?? () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#6 0x00007ffff528c823 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#7 0x00007fffdb15dd63 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<Exiv2::BasicError<char>, void (*)(Exiv2::BasicError<char> const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(Exiv2::BasicError<char> const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#8 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#9 0x00007ffff5d01ab8 in boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>::operator()(boost::python::detail::exception_handler const&, boost::function0<void> const&, void (*)(ecto::except::NullTendril const&)) const () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#10 0x00007ffff5d0099f in bool boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> >::operator()<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&> >(boost::_bi::type<bool>, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>&, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&>&, long) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#11 0x00007ffff5cffbe7 in bool boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >::operator()<boost::python::detail::exception_handler, boost::function0<void> >(boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#12 0x00007ffff5cfeb54 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#13 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 ... * Revert incorrect permission change from 992935e * added output of the final transform to text file (also fixed a small typo) * forgot a self. * Improved GPS Altitude tag detection and parsing * added argument for setting transform file path * added usage of outputTransformFile in python code. also updated readme to contain the file * forgot _file suffix * also have to set transform file here * Fix x,y dimensions in exif after resize. In numpy arrays, shape[0] corresponds to y and shape[1] corresponds to x. * Modified dockerfile, configure.sh script to install lidar2dems module * Added lidar2dems superbuild module, modified dockerfile, configure.sh to install lidar2dems deps * Started adding odm_dem module * Wrote ODM_DEM cell * Syntax fix, decimation parameter fix, tweaks * Updated checksum * Removed convert_to_dem * Typo * Labeled units * configure.sh: Yes to GAL deps Change-Id: If31faf28039f771238173490152d039a39e682ee * Upgraded PDAL to include ground kernel patch commit * Updated l2d md5 * Added automated DEM clipping * Skip classification if only DSM is requested, decimation parameter passing * Updated repo URLs, modified core2.dockerfile * Added env_paths option in system.run, added path to superbuild install directory for odm_dem module, fixed lidar2dems install * Fixed path error * Added dependency on opensfm * Removed MD5 check for lidar2dems * Added dem-initial-distance parameter * Parameter order fix * Changed dem-initial-distance default value * Update settings.yaml * Add new dem settings
peddyhh
pushed a commit
to peddyhh/ODM
that referenced
this issue
Jun 7, 2020
Resolves OpenDroneMap#580 Issue was caused by attempting to read data in ImageUniqueID tag, even though data is populated. By only reading the values we need from metadata we avoid the issue in pyexiv2. Should also improve performance. stacktrace of error: .#0 strlen () at ../sysdeps/x86_64/strlen.S:106 .OpenDroneMap#1 0x00007fffdb154ce7 in exiv2wrapper::ExifTag::ExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Exiv2::Exifdatum*, Exiv2::ExifData*, Exiv2::ByteOrder) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#2 0x00007fffdb154eb4 in exiv2wrapper::Image::getExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#3 0x00007fffdb15f3e6 in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<exiv2wrapper::ExifTag const (exiv2wrapper::Image::*)(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >), boost::python::default_call_policies, boost::mpl::vector3<exiv2wrapper::ExifTag const, exiv2wrapper::Image&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >::operator()(_object*, _object*) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#4 0x00007ffff52845cd in boost::python::objects::function::call(_object*, _object*) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#5 0x00007ffff52847c8 in ?? () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#6 0x00007ffff528c823 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#7 0x00007fffdb15dd63 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<Exiv2::BasicError<char>, void (*)(Exiv2::BasicError<char> const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(Exiv2::BasicError<char> const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .OpenDroneMap#8 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .OpenDroneMap#9 0x00007ffff5d01ab8 in boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>::operator()(boost::python::detail::exception_handler const&, boost::function0<void> const&, void (*)(ecto::except::NullTendril const&)) const () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#10 0x00007ffff5d0099f in bool boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> >::operator()<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&> >(boost::_bi::type<bool>, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>&, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&>&, long) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#11 0x00007ffff5cffbe7 in bool boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >::operator()<boost::python::detail::exception_handler, boost::function0<void> >(boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#12 0x00007ffff5cfeb54 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .OpenDroneMap#13 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 ... Former-commit-id: 992935e
pierotofy
pushed a commit
that referenced
this issue
Sep 21, 2020
Resolves #580 Issue was caused by attempting to read data in ImageUniqueID tag, even though data is populated. By only reading the values we need from metadata we avoid the issue in pyexiv2. Should also improve performance. stacktrace of error: .#0 strlen () at ../sysdeps/x86_64/strlen.S:106 .#1 0x00007fffdb154ce7 in exiv2wrapper::ExifTag::ExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Exiv2::Exifdatum*, Exiv2::ExifData*, Exiv2::ByteOrder) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .#2 0x00007fffdb154eb4 in exiv2wrapper::Image::getExifTag(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .#3 0x00007fffdb15f3e6 in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<exiv2wrapper::ExifTag const (exiv2wrapper::Image::*)(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >), boost::python::default_call_policies, boost::mpl::vector3<exiv2wrapper::ExifTag const, exiv2wrapper::Image&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >::operator()(_object*, _object*) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .#4 0x00007ffff52845cd in boost::python::objects::function::call(_object*, _object*) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .#5 0x00007ffff52847c8 in ?? () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .#6 0x00007ffff528c823 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .#7 0x00007fffdb15dd63 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<Exiv2::BasicError<char>, void (*)(Exiv2::BasicError<char> const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(Exiv2::BasicError<char> const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /usr/lib/python2.7/dist-packages/libexiv2python.so .#8 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 .#9 0x00007ffff5d01ab8 in boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>::operator()(boost::python::detail::exception_handler const&, boost::function0<void> const&, void (*)(ecto::except::NullTendril const&)) const () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .#10 0x00007ffff5d0099f in bool boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> >::operator()<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&> >(boost::_bi::type<bool>, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>&, boost::_bi::list2<boost::python::detail::exception_handler const&, boost::function0<void> const&>&, long) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .#11 0x00007ffff5cffbe7 in bool boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >::operator()<boost::python::detail::exception_handler, boost::function0<void> >(boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .#12 0x00007ffff5cfeb54 in boost::detail::function::function_obj_invoker2<boost::_bi::bind_t<bool, boost::python::detail::translate_exception<ecto::except::NullTendril, void (*)(ecto::except::NullTendril const&)>, boost::_bi::list3<boost::arg<1>, boost::arg<2>, boost::_bi::value<void (*)(ecto::except::NullTendril const&)> > >, bool, boost::python::detail::exception_handler const&, boost::function0<void> const&>::invoke(boost::detail::function::function_buffer&, boost::python::detail::exception_handler const&, boost::function0<void> const&) () from /home/mribbons/OpenDroneMap170517/SuperBuild/install/lib/python2.7/dist-packages/ecto/ecto_main.so .#13 0x00007ffff528c7f8 in boost::python::detail::exception_handler::operator()(boost::function0<void> const&) const () from /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.58.0 ... Former-commit-id: 992935e
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Hi,
I am getting an issue where processing hangs, eg if I start with:
This only seems to happen if I have a "larger" number of images, eg 20 or so. I have narrowed it down to a segfault in this line:
https://github.com/OpenDroneMap/OpenDroneMap/blob/master/scripts/dataset.py#L72
If I change the code like this, I can see the error:
I am sure that the images are OK as I used image magic to convert them down to smaller images. The entire dataset is about 7mb. I have processed datasets much larger in terms of total size than this without error, but whenever I try to process datasets with a certain number of files I encounter the issue.
The text was updated successfully, but these errors were encountered: