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Hi
I use fastp 0.19.5 on Linux and have an issue with truncated fastq.gz files.
Sometimes downloaded fastq.gz files are incomplete, truncated and fastp processes them as if they were complete.
For paired-end reads truncation implies that both fastq files have different numbers of reads.
On a truncated fastq.gz file the zcat command returns something like:
Hi
I use fastp 0.19.5 on Linux and have an issue with truncated fastq.gz files.
Sometimes downloaded fastq.gz files are incomplete, truncated and fastp processes them as if they were complete.
For paired-end reads truncation implies that both fastq files have different numbers of reads.
On a truncated fastq.gz file the zcat command returns something like:
Here is my command:
fastp -i SRRaaa_1.fastq.gz -I SRRaaa_2.fastq.gz --json SRRaaa.fastp.json --html SRRaaa.fastp.html --thread 2 > SRRaaa.fastp.log 2>&1
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