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Filter per tile sequence quality #304

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gubrins opened this issue Dec 1, 2020 · 1 comment
Open

Filter per tile sequence quality #304

gubrins opened this issue Dec 1, 2020 · 1 comment

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@gubrins
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gubrins commented Dec 1, 2020

Heys!
I'm working with whole-genome sequencing of a non-model organism and I was checking the quality of the data with FastQC. As I found that my per tile sequence quality was bad, I started looking for other softwares to filter my data.
That's when I found fastp, and now I'm filtering all my data with your software. However, as I obtained a failure with FastQC in the tile's section and fastp does not provide (as far as I know) any information about it, I reran FastQC after running fastp on my data and the tile's failure was still there.
How could I filter by tiles with Fastp?

Thanks,
Gabriel

@wangshun1121
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@sfchen 相同的需求,一年半以后仍然存在!陈博士可否考虑规划一下这个功能?

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