[INTERNAL, FEATURE] Clean up of folder and add openMS support #3
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…l variables from global.R
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Yes I added a command. The logs go to log_files/openms. |
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!rebuild |
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@jpfeuffer looks like it works now. The html page just has seqan statistics as a title... |
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@smehringer Yep looks good. There is another occurrence of SeqAn for that OpenMS specific column "who". Should probably be changed, too. |
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Ah also the plot titles sometimes. |
scripts/create_report.R
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| @@ -71,6 +71,11 @@ if(!require(RColorBrewer)) { | |||
| library(RColorBrewer, lib.loc=local.lib) | |||
| } | |||
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| if(!require(yaml)) { | |||
| install.packages("yaml", repos = c('http://rforge.net', 'http://cran.rstudio.org'), type = 'source', lib=local.lib) | |||
| library(RColorBrewer, lib.loc=local.lib) | |||
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should say library(yaml, lib.loc=local.lib) ?
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good catch thanks. Copy and Paste errors are my specialty 🌟
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I think you don't need the script.basename for the render location because you added getWd in the beginning already. |
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@jpfeuffer thanks for fixing the last things! 👍 |
This PR removes the unnecessary old scripts and logfiles and introduces parsing of OpenMS logs.
@jpfeuffer Please add an ssh call for the openMS logs in Jenkins. I can then update the Jenkins script to also create the openMS report.