Skip to content

Issues: Oufattole/meds-torch

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

43 Open 29 Closed
43 Open 29 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

MEDS death code/ Refer to MEDS-DEV tutorial
#113 opened Oct 31, 2024 by rvandewater
1
Allow Predict Script to Include Custom Prefixed Keys in Output and Batch Indexes
#112 opened Oct 29, 2024 by Oufattole
2 tasks
The Module ABC class is confusing and should be re-done as a decorator or Mixin
#111 opened Oct 29, 2024 by mmcdermott
Add a predict script that generates embeddings
#109 opened Oct 29, 2024 by Oufattole
3 tasks done
1
@Oufattole
Update the Triplet autoregressive model to perform conditional sampling of values conditioned on the code
#107 opened Oct 27, 2024 by Oufattole
2 tasks
Unconstrained Generative evaluation
#106 opened Oct 27, 2024 by Oufattole
Zero-shot evaluation
#105 opened Oct 27, 2024 by Oufattole
Add API support for generation that allow generating data after a prediction time and caching both the predictions and the real data.
#104 opened Oct 26, 2024 by Oufattole
4 tasks done
1
Static data is not being used in cases where it is not prepended.
#100 opened Oct 23, 2024 by mmcdermott
Simplify the dataset index for now to just have a subject ID and an end event index.
#92 opened Oct 17, 2024 by mmcdermott
1
Clean up docstrings and add doctests where appropriate
#87 opened Oct 17, 2024 by mmcdermott
3 tasks
1
Clean up and improve the getitem code path for subject data
#86 opened Oct 17, 2024 by mmcdermott
2 tasks
Tests take too long
#80 opened Oct 15, 2024 by mmcdermott
General MEDS dataset may have patient splits stored separately
#79 opened Oct 15, 2024 by Oufattole
Benchmarking
#78 opened Oct 15, 2024 by Oufattole
Add processing of meds-transform data to the integration tests
#77 opened Oct 15, 2024 by Oufattole
1
Should look into using 1D tensors with offsets instead of padding at all.
#72 opened Oct 15, 2024 by mmcdermott
We need to handle some way of not densifying the 4th dimension (text or ecgs for example) as that will be extremely sparse.
#71 opened Oct 15, 2024 by mmcdermott
Dataset API and Configuration
#55 opened Oct 14, 2024 by mmcdermott
13 of 16 tasks
1
7
Complete synthetic testing data
#54 opened Oct 10, 2024 by Oufattole
5 tasks done
Frozen reps kept in memory
#51 opened Oct 7, 2024 by teyaberg
Update the Project description
#50 opened Sep 20, 2024 by Oufattole
Fairness Evaluation
#48 opened Sep 19, 2024 by Oufattole
@abinithago
6
Improve Pretrained Model Loading for Fine-tuning
#47 opened Sep 18, 2024 by Oufattole
3 tasks
Implement time delta normalization in set_inter_event_time_stats
#45 opened Sep 16, 2024 by Oufattole
ProTip! What’s not been updated in a month: updated:<2024-09-30.