Refresh notebook outputs for new Jupyter env #327

``` _______ pavics-sdi-master/docs/source/notebooks/CaSR_basic.ipynb::Cell 0 _______ Notebook cell execution failed Cell 0: Cell outputs differ Input: import xarray as xr url = "https://pavics.ouranos.ca/twitcher/ows/proxy/thredds/dodsC/datasets/reanalyses/day_RDRSv2.1_NAM.ncml" # Open dataset. For hourly data, we suggest using the following chunking pattern: dict(time=720, rlon=50, rlat=50) ds = xr.open_dataset(url, chunks=dict(time=1461, rlon=50, rlat=50)) ds Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data... Carrera, ...' == '<xarray.Data... Carrera, ...' - <xarray.Dataset> Size: 418GB + <xarray.Dataset> Dimensions: (rlat: 800, rlon: 706, time: 14245) Coordinates: - * rlat (rlat) float32 3kB -46.17 -46.08 -45.99 ... 25.56 25.65 25.74 ? ---- + * rlat (rlat) float32 -46.17 -46.08 -45.99 ... 25.56 25.65 25.74 - * rlon (rlon) float32 3kB 324.6 324.7 324.8 ... 387.9 388.0 388.1 ? ---- + * rlon (rlon) float32 324.6 324.7 324.8 324.9 ... 387.9 388.0 388.1 ? ++++++ - rotated_pole float32 4B ... ? --- + rotated_pole float32 ... - * time (time) datetime64[ns] 114kB/DATE/... 2018-12-31 ? ------ + * time (time) datetime64[ns]/DATE/1980-01-02 ... 2018-12-31 ? +++++++++++ - lat (rlat, rlon) float32 2MB dask.array<chunksize=(50, 50), meta=np.ndarray> ? ---- + lat (rlat, rlon) float32 dask.array<chunksize=(50, 50), meta=np.ndarray> - lon (rlat, rlon) float32 2MB dask.array<chunksize=(50, 50), meta=np.ndarray> ? ---- + lon (rlat, rlon) float32 dask.array<chunksize=(50, 50), meta=np.ndarray> Data variables: (12/16) - lakeFrac (rlat, rlon) float32 2MB dask.array<chunksize=(50, 50), meta=np.ndarray> ? ---- + lakeFrac (rlat, rlon) float32 dask.array<chunksize=(50, 50), meta=np.ndarray> - sftlf (rlat, rlon) float32 2MB dask.array<chunksize=(50, 50), meta=np.ndarray> ? ---- + sftlf (rlat, rlon) float32 dask.array<chunksize=(50, 50), meta=np.ndarray> - sftof (rlat, rlon) float32 2MB dask.array<chunksize=(50, 50), meta=np.ndarray> ? ---- + sftof (rlat, rlon) float32 dask.array<chunksize=(50, 50), meta=np.ndarray> - tas (time, rlat, rlon) float32 32GB dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ? ----- + tas (time, rlat, rlon) float32 dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> - tasmin (time, rlat, rlon) float32 32GB dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ? ----- + tasmin (time, rlat, rlon) float32 dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> - tasmax (time, rlat, rlon) float32 32GB dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ? ----- + tasmax (time, rlat, rlon) float32 dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ... ... - psl (time, rlat, rlon) float32 32GB dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ? ----- + psl (time, rlat, rlon) float32 dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> - ps (time, rlat, rlon) float32 32GB dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ? ----- + ps (time, rlat, rlon) float32 dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> - huss (time, rlat, rlon) float32 32GB dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ? ----- + huss (time, rlat, rlon) float32 dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> - hursmin (time, rlat, rlon) float32 32GB dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ? ----- + hursmin (time, rlat, rlon) float32 dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> - hursmax (time, rlat, rlon) float32 32GB dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ? ----- + hursmax (time, rlat, rlon) float32 dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> - hurs (time, rlat, rlon) float32 32GB dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> ? ----- + hurs (time, rlat, rlon) float32 dask.array<chunksize=(1461, 50, 50), meta=np.ndarray> Attributes: (12/29) Conventions: CF-1.8 Notes: Created from the Gem_geophy.fst file provided by Mi... doi: https://doi.org/10.5194/hess-25-4917-2021 frequency: fx license: https://eccc-msc.github.io/open-data/licence/readme... organisation: ECCC ... ... institute_id: ECCC dataset_id: RDRSv2.1 abstract: Environment and Climate Change Canada has initiated... dataset_description: https://doi.org/10.5194/hess-25-4917-2021 license_type: permissive citation: Gasset, N., Fortin, V., Dimitrijevic, M., Carrera, ... _______ pavics-sdi-master/docs/source/notebooks/CaSR_basic.ipynb::Cell 1 _______ Notebook cell execution failed Cell 1: Cell outputs differ Input: from clisops.core import subset from dask.diagnostics import ProgressBar from matplotlib import pyplot as plt # Subset bounding box lon_bnds = [-70, -55] lat_bnds = [44, 55] # Loading the coordinate data speeds up the subsetting process a little for coord in ["lat", "lon"]: ds[coord] = ds[coord].load() # Subset bbox bbox = subset.subset_bbox( ds, lon_bnds=lon_bnds, lat_bnds=lat_bnds, start_date="1981", end_date="2010" ) # Subset gridpoint site = subset.subset_gridpoint(ds, lat=40, lon=-60) with xr.set_options(display_expand_data_vars=False, display_expand_coords=False): display(bbox) display(site) Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data... Carrera, ...' == '<xarray.Data... Carrera, ...' - <xarray.Dataset> Size: 13GB ? ----------- + <xarray.Dataset> Dimensions: (rlat: 156, rlon: 150, time: 10957) Coordinates: (6) Data variables: (16) Attributes: (12/29) Conventions: CF-1.8 Notes: Created from the Gem_geophy.fst file provided by Mi... doi: https://doi.org/10.5194/hess-25-4917-2021 frequency: fx license: https://eccc-msc.github.io/open-data/licence/readme... organisation: ECCC ... ... institute_id: ECCC dataset_id: RDRSv2.1 abstract: Environment and Climate Change Canada has initiated... dataset_description: https://doi.org/10.5194/hess-25-4917-2021 license_type: permissive citation: Gasset, N., Fortin, V., Dimitrijevic, M., Carrera, ... _______ pavics-sdi-master/docs/source/notebooks/CaSR_basic.ipynb::Cell 4 _______ Notebook cell execution failed Cell 4: Cell outputs differ Input: bbox.rotated_pole Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data...itude: 0.0' == '<xarray.Data...itude: 0.0' - <xarray.DataArray 'rotated_pole' ()> Size: 4B ? --------- + <xarray.DataArray 'rotated_pole' ()> array(9.96921e+36, dtype=float32) Coordinates: - rotated_pole float32 4B 9.969e+36 ? --- + rotated_pole float32 9.969e+36 Attributes: earth_radius: 6371220.0 grid_mapping_name: rotated_latitude_longitude grid_north_pole_latitude: 31.758316040039062 grid_north_pole_longitude: 87.59703063964844 long_name: coordinates of the rotated North Pole longitude_of_prime_meridian: 0.0 north_pole_grid_longitude: 0.0 ```

``` ______ pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb::Cell 5 _______ Notebook cell execution failed Cell 5: Cell outputs differ Input: ds = xr.open_dataset(fn) print(ds.data_vars) ds.Band1.plot() plt.show() Traceback: mismatch 'stdout' assert reference_output == test_output failed: 'Data variabl...float32 ...\n' == 'Data variabl...t32 6MB ...\n' Data variables: - crs |S1 1B ... ? --- + crs |S1 ... - Band1 (lat, lon) float32 6MB ... ? ---- + Band1 (lat, lon) float32 ... ```

``` _________ pavics-sdi-master/docs/source/notebooks/climex.ipynb::Cell 1 _________ Notebook cell execution failed Cell 1: Cell outputs differ Input: # Opening the link takes a while, because the server creates an aggregated view of 435,000 individual files. url = cat.df.path[0] ds = xr.open_dataset(url, chunks=dict(realization=2, time=30 * 3)) ds Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data...N.string1: 1' == '<xarray.Data...N.string1: 1' - <xarray.Dataset> Size: 4TB ? ---------- + <xarray.Dataset> Dimensions: (rlat: 280, rlon: 280, time: 52924, realization: 50) Coordinates: - * rlat (rlat) float64 2kB -12.61 -12.51 -12.39 ... 17.85 17.96 18.07 ? ---- + * rlat (rlat) float64 -12.61 -12.51 -12.39 ... 17.85 17.96 18.07 - * rlon (rlon) float64 2kB 2.695 2.805 2.915 ... 33.17 33.28 33.39 ? ---- + * rlon (rlon) float64 2.695 2.805 2.915 3.025 ... 33.17 33.28 33.39 ? ++++++ - * time (time) object 423kB/DATE/TIME/.../DATE/00:0... ? ------ ^^^ + * time (time) object/DATE/TIME/.../DATE/00:00:00 ? ^^^^ - * realization (realization) |S64 3kB b'historical-r1-r10i1p1' ... b'histo... ? ---- + * realization (realization) |S64 b'historical-r1-r10i1p1' ... b'historica... ? ++++ - lat (rlat, rlon) float32 314kB dask.array<chunksize=(280, 280), meta=np.ndarray> ? ------ + lat (rlat, rlon) float32 dask.array<chunksize=(280, 280), meta=np.ndarray> - lon (rlat, rlon) float32 314kB dask.array<chunksize=(280, 280), meta=np.ndarray> ? ------ + lon (rlat, rlon) float32 dask.array<chunksize=(280, 280), meta=np.ndarray> Data variables: - rotated_pole |S64 64B ... ? ---- + rotated_pole |S64 ... - tasmin (realization, time, rlat, rlon) float32 830GB dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> ? ------ + tasmin (realization, time, rlat, rlon) float32 dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> - tasmax (realization, time, rlat, rlon) float32 830GB dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> ? ------ + tasmax (realization, time, rlat, rlon) float32 dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> - tas (realization, time, rlat, rlon) float32 830GB dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> ? ------ + tas (realization, time, rlat, rlon) float32 dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> - pr (realization, time, rlat, rlon) float32 830GB dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> ? ------ + pr (realization, time, rlat, rlon) float32 dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> - prsn (realization, time, rlat, rlon) float32 830GB dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> ? ------ + prsn (realization, time, rlat, rlon) float32 dask.array<chunksize=(2, 90, 280, 280), meta=np.ndarray> Attributes: (12/30) Conventions: CF-1.6 DODS.dimName: string1 DODS.strlen: 0 EXTRA_DIMENSION.bnds: 2 NCO: "4.5.2" abstract: The ClimEx CRCM5 Large Ensemble of high-resolut... ... ... project_id: CLIMEX rcm_version_id: v3331 terms_of_use: http://www.climex-project.org/sites/default/fil... title: The ClimEx CRCM5 Large Ensemble type: RCM EXTRA_DIMENSION.string1: 1 _________ pavics-sdi-master/docs/source/notebooks/climex.ipynb::Cell 5 _________ Notebook cell execution failed Cell 5: Cell outputs differ Input: ds = xr.open_dataset( url, chunks=dict(realization=1, time=365, rlat=50 * 3, rlon=50 * 3) ) xclim.set_options(check_missing="pct", missing_options={"pct": {"tolerance": 0.05}}) sdii = xclim.atmos.daily_pr_intensity(pr=ds.pr.sel(time="2000")) sdii Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data...nnual aver...' == '<xarray.Data...nnual aver...' Skipping 64 identical leading characters in diff, use -v to show - lon: 280)> Size: 31MB + lon: 280)> dask.array<where, shape=(50, 1, 280, 280), dtype=float64, chunksize=(1, 1, 150, 150), chunktype=numpy.ndarray> Coordinates: - * rlat (rlat) float64 2kB -12.61 -12.51 -12.39 ... 17.85 17.96 18.07 ? ---- + * rlat (rlat) float64 -12.61 -12.51 -12.39 ... 17.85 17.96 18.07 - * rlon (rlon) float64 2kB 2.695 2.805 2.915 ... 33.17 33.28 33.39 ? ---- + * rlon (rlon) float64 2.695 2.805 2.915 3.025 ... 33.17 33.28 33.39 ? ++++++ - * realization (realization) |S64 3kB b'historical-r1-r10i1p1' ... b'histor... ? ---- + * realization (realization) |S64 b'historical-r1-r10i1p1' ... b'historical... ? ++++ - lat (rlat, rlon) float32 314kB dask.array<chunksize=(150, 150), meta=np.ndarray> ? ------ + lat (rlat, rlon) float32 dask.array<chunksize=(150, 150), meta=np.ndarray> - lon (rlat, rlon) float32 314kB dask.array<chunksize=(150, 150), meta=np.ndarray> ? ------ + lon (rlat, rlon) float32 dask.array<chunksize=(150, 150), meta=np.ndarray> - * time (time) object 8B/DATE/00:00:00 ? --- + * time (time) object/DATE/00:00:00 Attributes: units: mm d-1 cell_methods: time: mean history: [DATE_TIME] sdii: SDII(pr=pr, thresh='1 mm/day'... standard_name: lwe_thickness_of_precipitation_amount long_name: Average precipitation during days with daily precipitatio... description: Annual simple daily intensity index (sdii) or annual aver... _________ pavics-sdi-master/docs/source/notebooks/climex.ipynb::Cell 8 _________ Notebook cell execution failed Cell 8: Cell outputs differ Input: # Subset over the Montreal gridpoint ds = xr.open_dataset(url, chunks=dict(realization=1, time=365 * 50, rlon=25, rlat=25)) pt = subset_gridpoint(ds, lon=-73.69, lat=45.50) print("Input dataset for Montreal :") display(pt) out = xclim.atmos.max_1day_precipitation_amount(pr=pt.pr, freq="YS") print("Maximim 1-day precipitation `lazy` output ..") out Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data...N.string1: 1' == '<xarray.Data...N.string1: 1' - <xarray.Dataset> Size: 53MB ? ----------- + <xarray.Dataset> Dimensions: (time: 52924, realization: 50) Coordinates: - rlat float64 8B 0.365 ? --- + rlat float64 0.365 - rlon float64 8B 16.12 ? --- + rlon float64 16.12 - * time (time) object 423kB/DATE/TIME/.../DATE/00:0... ? ------ ^^^ + * time (time) object/DATE/TIME/.../DATE/00:00:00 ? ^^^^ - * realization (realization) |S64 3kB b'historical-r1-r10i1p1' ... b'histo... ? ---- + * realization (realization) |S64 b'historical-r1-r10i1p1' ... b'historica... ? ++++ - lat float32 4B 45.45 ? --- + lat float32 45.45 - lon float32 4B -73.7 ? --- + lon float32 -73.7 Data variables: - rotated_pole |S64 64B b'' ? ---- + rotated_pole |S64 b'' - tasmin (realization, time) float32 11MB dask.array<chunksize=(1, 18250), meta=np.ndarray> ? ----- + tasmin (realization, time) float32 dask.array<chunksize=(1, 18250), meta=np.ndarray> - tasmax (realization, time) float32 11MB dask.array<chunksize=(1, 18250), meta=np.ndarray> ? ----- + tasmax (realization, time) float32 dask.array<chunksize=(1, 18250), meta=np.ndarray> - tas (realization, time) float32 11MB dask.array<chunksize=(1, 18250), meta=np.ndarray> ? ----- + tas (realization, time) float32 dask.array<chunksize=(1, 18250), meta=np.ndarray> - pr (realization, time) float32 11MB dask.array<chunksize=(1, 18250), meta=np.ndarray> ? ----- + pr (realization, time) float32 dask.array<chunksize=(1, 18250), meta=np.ndarray> - prsn (realization, time) float32 11MB dask.array<chunksize=(1, 18250), meta=np.ndarray> ? ----- + prsn (realization, time) float32 dask.array<chunksize=(1, 18250), meta=np.ndarray> Attributes: (12/30) Conventions: CF-1.6 DODS.dimName: string1 DODS.strlen: 0 EXTRA_DIMENSION.bnds: 2 NCO: "4.5.2" abstract: The ClimEx CRCM5 Large Ensemble of high-resolut... ... ... project_id: CLIMEX rcm_version_id: v3331 terms_of_use: http://www.climex-project.org/sites/default/fil... title: The ClimEx CRCM5 Large Ensemble type: RCM EXTRA_DIMENSION.string1: 1 ```

``` ________ pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb::Cell 5 ________ Notebook cell execution failed Cell 5: Cell outputs differ Input: # Open the opendap link with xarray import xarray as xr ds = xr.open_mfdataset(urls) ds Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data...ension: time' == '<xarray.Data...ension: time' - <xarray.Dataset> Size: 643MB + <xarray.Dataset> Dimensions: (time: 1032, bnds: 2, plev: 19, lat: 64, lon: 128) Coordinates: - * time (time) object 8kB/DATE/TIME/.../DATE/12:00:00 ? ---- + * time (time) object/DATE/TIME/.../DATE/12:00:00 - * plev (plev) float64 152B 1e+05 9.25e+04 8.5e+04 ... 1e+03 500.0 100.0 ? ----- + * plev (plev) float64 1e+05 9.25e+04 8.5e+04 7e+04 ... 1e+03 500.0 100.0 ? ++++++ - * lat (lat) float64 512B -87.86 -85.1 -82.31 ... 82.31 85.1 87.86 ? ----- + * lat (lat) float64 -87.86 -85.1 -82.31 -79.53 ... 82.31 85.1 87.86 ? +++++++ - * lon (lon) float64 1kB 0.0 2.812 5.625 8.438 ... 351.6 354.4 357.2 ? ---- + * lon (lon) float64 0.0 2.812 5.625 8.438 ... 348.8 351.6 354.4 357.2 ? ++++++ Dimensions without coordinates: bnds Data variables: - time_bnds (time, bnds) object 17kB dask.array<chunksize=(1032, 2), meta=np.ndarray> ? ----- + time_bnds (time, bnds) object dask.array<chunksize=(1032, 2), meta=np.ndarray> - lat_bnds (lat, bnds) float64 1kB dask.array<chunksize=(64, 2), meta=np.ndarray> ? ---- + lat_bnds (lat, bnds) float64 dask.array<chunksize=(64, 2), meta=np.ndarray> - lon_bnds (lon, bnds) float64 2kB dask.array<chunksize=(128, 2), meta=np.ndarray> ? ---- + lon_bnds (lon, bnds) float64 dask.array<chunksize=(128, 2), meta=np.ndarray> - hus (time, plev, lat, lon) float32 643MB dask.array<chunksize=(1032, 19, 64, 128), meta=np.ndarray> ? ------ + hus (time, plev, lat, lon) float32 dask.array<chunksize=(1032, 19, 64, 128), meta=np.ndarray> Attributes: (12/54) CCCma_model_hash: fc4bb7db954c862d023b546e19aec6c588bc0552 CCCma_parent_runid: p2-his14 CCCma_pycmor_hash: 26c970628162d607fffd14254956ebc6dd3b6f49 CCCma_runid: p2-s4514 Conventions: CF-1.7 CMIP-6.2 YMDH_branch_time_in_child: 2015:01:01:00 ... ... variable_id: hus variant_label: r14i1p2f1 version: v20190429 license: CMIP6 model data produced by The Governm... cmor_version: 3.5.0 DODS_EXTRA.Unlimited_Dimension: time ```

``` _______ pavics-sdi-master/docs/source/notebooks/forecasts.ipynb::Cell 5 ________ Notebook cell execution failed Cell 5: Cell outputs differ Input: hdd.hvplot.hist(groupby="time", legend=False, width=300) + cdd.hvplot.hist( groupby="time", legend=False, width=300 ) Traceback: mismatch 'text/plain' assert reference_output == test_output failed: ':Layout\n ...e_days_count)' == ':Layout\n ...e_days_count)' Skipping 57 identical leading characters in diff, use -v to show - verlay [Variable] + verlay [Element] :Histogram [heating_degree_days] (heating_degree_days_count) .DynamicMap.II :DynamicMap [time] - :NdOverlay [Variable] ? ^^^^^^ + :NdOverlay [Element] ? ^ ++++ :Histogram [cooling_degree_days] (cooling_degree_days_count) ```

``` _______ pavics-sdi-master/docs/source/notebooks/subsetting.ipynb::Cell 4 _______ Notebook cell execution failed Cell 4: Cell outputs differ Input: res = resp.get() print("URL: ", res.output) res = resp.get(asobj=True) res.output Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data... 2.6.0' == '<xarray.Data... 2.6.0' - <xarray.Dataset> Size: 385B ? ----------- + <xarray.Dataset> Dimensions: (time: 12, region: 1, bnds: 2) Coordinates: - * time (time) datetime64[ns] 96B 2006-01-16T12:00:00 ... 200... ? ---- + * time (time) datetime64[ns] 2006-01-16T12:00:00 ... 2006-12... ? ++++ - lat float64 8B ... ? --- + lat float64 ... - lon float64 8B ... ? --- + lon float64 ... Dimensions without coordinates: region, bnds Data variables: - time_bnds (region, time, bnds) datetime64[ns] 192B ... ? ----- + time_bnds (region, time, bnds) datetime64[ns] ... - lat_bnds (region, bnds) float64 16B ... ? ---- + lat_bnds (region, bnds) float64 ... - lon_bnds (region, bnds) float64 16B ... ? ---- + lon_bnds (region, bnds) float64 ... - latitude_longitude (region) |S1 1B ... ? --- + latitude_longitude (region) |S1 ... - tasmax (region, time) float32 48B ... ? ---- + tasmax (region, time) float32 ... Attributes: (12/27) institution: Max Planck Institute for Meteorology institute_id: MPI-M experiment_id: rcp45 source: MPI-ESM-MR 2011; URL: http://svn.zmaw.de/svn/cosm... model_id: MPI-ESM-MR forcing: GHG,Oz,SD,Sl,Vl,LU ... ... table_id: Table Amon (27 April 2011) a5a1c518f52ae340313ba0... title: MPI-ESM-MR model output prepared for CMIP5 RCP4.5 parent_experiment: historical modeling_realm: atmos realization: 1 cmor_version: 2.6.0 ```

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Refresh notebook outputs for new Jupyter env #327

Refresh notebook outputs for new Jupyter env #327

Commits on May 10, 2024