GEM

Build your own GEM model

Requirments

Python3

How to Run

git clone git@github.com:Oyserman/GEM.git

cd GEM

python3 GEM_generator.py

Then follow the prompts to build your tailored model.

Background information

For additional information, please see:

Oyserman, B. O., Cordovez, V., Flores, S. S., Leite, M. F., Nijveen, H., Medema, M. H., & Raaijmakers, J. M. (2020). Extracting the GEMs: Genotype, Environment, and Microbiome Interactions Shaping Host Phenotypes. Frontiers in microbiology, 11.