deface

A simple script to deface (with use of fsl_deface) multiple T1/T2-weighetned files prepared according to the BIDS standard.

deface

A simple script to deface (with use of fsl_deface) multiple T1/T2-weightened files prepared according to the BIDS standard. Note: files will be overwritten with new versions, preserving the BIDS naming standard.

Usage

Syntax: ./deface.sh [-o|-t]

./deface.sh

Options:

• without an option -- de-face both T1/T2-weightened images
• -o -- de-face only T1-weigtened images
• -t -- de-face only T2-weigtened images

Additional information

• Script uses standard fsl_deface function (without any options); change this line "fsl_deface $f $f" to add options if needed
• fsl_deface function can be downloaded with fsl software
• Data should be prepared in BIDS format
• Script should be added to the main project directory (main dir with sub-01, sub-02 etc. directories)

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