Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add summary stats to ComputeSamTags output #282

Closed
d-cameron opened this issue Dec 13, 2019 · 0 comments
Closed

Add summary stats to ComputeSamTags output #282

d-cameron opened this issue Dec 13, 2019 · 0 comments
Labels
enhancement

Comments

@d-cameron
Copy link
Member

Some summary stats regarding the changes that were made would be useful.

  • tags added

  • tags removed

  • tags with changed value

  • flags changed (isdup, ispair, sec vs supp)

  • issues not resolved (e.g. hard clip)
d-cameron pushed a commit that referenced this issue Feb 22, 2021
Updated ComputeSamTags behaviour
c051fae 
- Dropping excessively overlapping split read alignments (contained alignment & >25bp overlaps)
- #282 Add summary stats to ComputeSamTags/PreprocessForBreakendAssembly output
- #363 preferring non-ALT alignments when determining best split reads
- Refactored SAMRecordUtil.calculateTemplateTags into multiple methods
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@d-cameron