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I am using virusbreakend with the default bwa aligner and I can't get past the AnnotateInsertedSequence step. Please let me know what this log file suggests the problem is.
Looks like you're missing /home/vragkousis/Desktop/Tools/Genomes/hg38.fa.dict. Running gridss -s setupreference -r /home/vragkousis/Desktop/Tools/Genomes/hg38.fa should create it.
Hello!
I am using virusbreakend with the default bwa aligner and I can't get past the AnnotateInsertedSequence step. Please let me know what this log file suggests the problem is.
virusbreakend.20211219_193215.OGpowerhouse.62447.log
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