Release 1.29.0 #505
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Release 1.29.0 #505
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Allow usage of @Autowired in the CLI definitions since they are loaded as beans. Deprecate most of the AbstractSpringAwareCLI logic since it can now be done via annotations. Use ApplicationContext in GemmaCLI and SpringContextUtil so that we can reuse the component scan logic via getBeansOfType. Merge workerContext with cliContext as we don't need to make distinctions between the two.
Unfortunately, it appears that this error arises when there is high contention on this specific call. Inline removeForExperiment() to make sure that findByInvestigation() and remove() happens in a single transaction.
Use a finally block to close the scrollable results. Replace two unnecessary usage of scroll() that should be simplified by a more efficient list() call.
update home page slide show to show only database stats hide diff ex and coex search from home page hide some features from navigation menus gene page some tabs and some details hidden remove social media link update copyright date refer to #154
Only include tests marked by the UnitTest category for maven-sure-fire-plugin. Include all test ending with Test.java and exclude those marked by the UnitTest category for integration tests. Use integration-test and verify goals for maven-jasmin-plugin as it require a fake browser.
…egration-tests Use maven-failsafe-plugin to handle integration tests
Only retain the taxon-based constructor that lookups the configuration.
Move commons-io to the root pom Related to #259 although we haven't changed the package naming yet.
Fix typo in PubMedSearchTest test name.
Make it an error to pass -testing/--testing in the command arguments.
Move all cache configuration in ehcache.xml.
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There's no point in caching entities that are only by users and admins in very specific contexts and that should always be fresh.
Check if the cache is an Ehcache before casting it. Remove unused Terracotta section. Properly escape HTML entities when generating stats.
Those resources were relocated to be properly namespaced in gsec JAR.
Hibernate 4 uses that information to truncate fractional seconds accordingly. We want to preserve the milliseconds of the java.util.Date object, so 3 is adequate.
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Reminder once in production:
*.AUDIT_TRAIL_FKcolumns to be non-null Make AuditTrail non-nullable in the data model #486BIBLOGRAPHIC_REFERENCE.PUBLICATION_DATEto be a simpleDATEfield Hibernate 4 truncate datetime to their stated precision #507