failed to run `@example` block in src/example.md:3-16 ```@example beexample using MetidaBioeq, CSV, DataFrames, CategoricalArrays; bedf2x2 = CSV.File(joinpath(dirname(pathof(MetidaBioeq)), "..", "test", "csv", "2x2rds1.csv")) |> DataFrame transform!(bedf2x2, :Subject => categorical, renamecols = false) transform!(bedf2x2, :Period => categorical, renamecols = false) bedf2x2.logVar = log.(bedf2x2.Var) bedf2x2x4 = CSV.File(joinpath(dirname(pathof(MetidaBioeq)), "..", "test", "csv", "2x2x4rds1.csv")) |> DataFrame transform!(bedf2x2x4, :Subject => categorical, renamecols = false) transform!(bedf2x2x4, :Period => categorical, renamecols = false) nothing; # hide ``` exception = ArgumentError: column name :Subject not found in the data frame Stacktrace: [1] lookupname @ ~/.julia/packages/DataFrames/58MUJ/src/other/index.jl:413 [inlined] [2] getindex @ ~/.julia/packages/DataFrames/58MUJ/src/other/index.jl:422 [inlined] [3] normalize_selection(idx::DataFrames.Index, sel::Pair{<:Union{AbstractString, Signed, Symbol, Unsigned}, <:Union{Function, Type}}, renamecols::Bool) @ DataFrames ~/.julia/packages/DataFrames/58MUJ/src/abstractdataframe/selection.jl:488 [4] manipulate(::DataFrames.DataFrame, ::Any, ::Vararg{Any}; copycols::Bool, keeprows::Bool, renamecols::Bool) @ DataFrames ~/.julia/packages/DataFrames/58MUJ/src/abstractdataframe/selection.jl:1697 [5] select(::DataFrames.DataFrame, ::Any, ::Vararg{Any}; copycols::Bool, renamecols::Bool, threads::Bool) @ DataFrames ~/.julia/packages/DataFrames/58MUJ/src/abstractdataframe/selection.jl:1299 [6] #select!#579 @ ~/.julia/packages/DataFrames/58MUJ/src/abstractdataframe/selection.jl:946 [inlined] [7] #transform!#582 @ ~/.julia/packages/DataFrames/58MUJ/src/abstractdataframe/selection.jl:996 [inlined] [8] top-level scope @ example.md:7 [9] eval @ ./boot.jl:368 [inlined] [10] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [11] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [12] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [13] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [14] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:511 [15] with_logger @ ./logging.jl:623 [inlined] [16] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [17] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752

failed to run `@example` block in src/example.md:28-39 ```@example beexample be1 = MetidaBioeq.bioequivalence(bedf2x2, vars = :Var, subject = :Subject, formulation = :Formulation, period = :Period, sequence = :Sequence, reference = "R", design = "2x2", autoseq = true, logt = false) ``` exception = Subject or formulation column not found in dataframe! Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] bioequivalence(data::DataFrames.DataFrame; vars::Symbol, subject::Symbol, period::Symbol, formulation::Symbol, sequence::Symbol, stage::Nothing, reference::String, design::String, io::IOContext{Base.PipeEndpoint}, seqcheck::Bool, designcheck::Bool, dropcheck::Bool, info::Bool, warns::Bool, autoseq::Bool, logt::Bool) @ MetidaBioeq ~/work/MetidaBioeq.jl/MetidaBioeq.jl/src/bioequivalence.jl:88 [3] top-level scope @ example.md:29 [4] eval @ ./boot.jl:368 [inlined] [5] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [6] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [7] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [8] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [9] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:511 [10] with_logger @ ./logging.jl:623 [inlined] [11] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [12] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752

failed to run `@example` block in src/example.md:43-53 ```@example beexample be2 = MetidaBioeq.bioequivalence(bedf2x2x4, vars = :logVar, subject = :Subject, formulation = :Formulation, period = :Period, sequence = :Sequence, reference = "R", autoseq = true, logt = true) ``` exception = UndefVarError: bedf2x2x4 not defined Stacktrace: [1] top-level scope @ example.md:44 [2] eval @ ./boot.jl:368 [inlined] [3] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:511 [8] with_logger @ ./logging.jl:623 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752

failed to run `@example` block in src/example.md:61-63 ```@example beexample beAglm = MetidaBioeq.estimate(be1; estimator = "glm", method = "A") ``` exception = UndefVarError: be1 not defined Stacktrace: [1] top-level scope @ example.md:62 [2] eval @ ./boot.jl:368 [inlined] [3] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:511 [8] with_logger @ ./logging.jl:623 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752

failed to run `@example` block in src/example.md:65-67 ```@example beexample beAglm.models[1] ``` exception = UndefVarError: beAglm not defined Stacktrace: [1] top-level scope @ example.md:66 [2] eval @ ./boot.jl:368 [inlined] [3] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:511 [8] with_logger @ ./logging.jl:623 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752

failed to run `@example` block in src/example.md:74-76 ```@example beexample beBmm = MetidaBioeq.estimate(be2; estimator = "mm", method = "B") ``` exception = UndefVarError: be2 not defined Stacktrace: [1] top-level scope @ example.md:75 [2] eval @ ./boot.jl:368 [inlined] [3] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:511 [8] with_logger @ ./logging.jl:623 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752

failed to run `@example` block in src/example.md:78-80 ```@example beexample beBmm.models[1] ``` exception = UndefVarError: beBmm not defined Stacktrace: [1] top-level scope @ example.md:79 [2] eval @ ./boot.jl:368 [inlined] [3] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:511 [8] with_logger @ ./logging.jl:623 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752

failed to run `@example` block in src/example.md:86-88 ```@example beexample beBmet = MetidaBioeq.estimate(be2; estimator = "met", method = "C") ``` exception = UndefVarError: be2 not defined Stacktrace: [1] top-level scope @ example.md:87 [2] eval @ ./boot.jl:368 [inlined] [3] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:511 [8] with_logger @ ./logging.jl:623 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752

failed to run `@example` block in src/example.md:90-92 ```@example beexample beBmet.models[1] ``` exception = UndefVarError: beBmet not defined Stacktrace: [1] top-level scope @ example.md:91 [2] eval @ ./boot.jl:368 [inlined] [3] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:511 [8] with_logger @ ./logging.jl:623 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752

1 docstring not included in the manual: MetidaBioeq.estimate :: Tuple{Any} These are docstrings in the checked modules (configured with the modules keyword) that are not included in canonical @docs or @autodocs blocks.

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