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Release 0.17.0 #142

Merged
merged 486 commits into from
May 23, 2024
Merged

Release 0.17.0 #142

merged 486 commits into from
May 23, 2024

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johandahlberg
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Release pixelator 0.17.0

fbdtemme and others added 30 commits February 22, 2024 10:43
Co-authored-by: Alvaro Martinez Barrio <Alvaro.Martinez.Barrio@pixelgen.com>
…-workflow' into feature/nf-pixelator-integration-workflow
Also add names to some steps.
Co-authored-by: Alvaro Martinez Barrio <Alvaro.Martinez.Barrio@pixelgen.com>
…m:PixelgenTechnologies/pixelator into feature/nf-pixelator-integration-workflow
…-integration-workflow

Add nf-core-pixelator integration workflow
johandahlberg and others added 26 commits April 30, 2024 13:02
…itch-from-clr-to-log1p-as-default-polarity-transformation

Remove clr and use log1p as default polarity score transformation
…ature-flags

Add basic feature flag module
…ntic-2.4.0

build(deps): bump pydantic from 2.0.3 to 2.4.0
…ding-rate-diff-transformation

Adding the rate_diff_transformation function.
…ore converting to boolean for jaccard index calculation
…etting-negative-marker-values-to-true

explicitly check marker value expressions to be greater than zero bef…
Prepare change log for release of 0.17.0
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codecov bot commented May 23, 2024

Codecov Report

Attention: Patch coverage is 87.06294% with 370 lines in your changes are missing coverage. Please review.

Project coverage is 81.81%. Comparing base (90fd3c7) to head (794e70e).

Files Patch % Lines
src/pixelator/plot/__init__.py 81.06% 50 Missing ⚠️
src/pixelator/report/qcreport/main.py 22.95% 47 Missing ⚠️
src/pixelator/pixeldataset/datastores.py 88.29% 35 Missing ⚠️
src/pixelator/pixeldataset/precomputed_layouts.py 85.86% 26 Missing ⚠️
src/pixelator/test_utils/layout.py 41.37% 17 Missing ⚠️
src/pixelator/cli/collapse.py 11.11% 16 Missing ⚠️
src/pixelator/cli/analysis.py 17.64% 14 Missing ⚠️
src/pixelator/cli/layout.py 56.66% 13 Missing ⚠️
src/pixelator/amplicon/process.py 9.09% 10 Missing ⚠️
src/pixelator/analysis/__init__.py 37.50% 10 Missing ⚠️
... and 32 more
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #142      +/-   ##
==========================================
+ Coverage   74.59%   81.81%   +7.21%     
==========================================
  Files          87      118      +31     
  Lines        4874     6560    +1686     
==========================================
+ Hits         3636     5367    +1731     
+ Misses       1238     1193      -45     

☔ View full report in Codecov by Sentry.
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@johandahlberg johandahlberg merged commit 593252e into main May 23, 2024
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6 participants