Biological assemblies verified #115

	# This workflow will install Python dependencies, run tests, and lint with a variety of Python versions
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: PACKMAN Continuous Integration

	on:
	push:
	branches: [ "master", "dev" ]
	pull_request:
	branches: [ "master", "dev" ]

	jobs:
	ruff:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- run: pip install --user ruff
	- run: ruff check --exit-zero --line-length=320 --target-version=py38 --statistics . \| sort -k 2
	- run: ruff check --ignore=E402,E501,E701,E722,E741,F401,F403,F841
	--output-format=github --target-version=py38 .

	build:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	pip install --upgrade pip
	pip install pytest
	pip install typing-extensions
	- run: pip install --editable .
	- name: Test with pytest
	run: pytest

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