Replaced all SRT wiht their SCT counterparts except for 4:

(1)G-C306 "Measurement Method" (2)A-10044 "Non-Lesion Object Type" (3)T-00317 "FindingSite" (4)R-404A4 "Entire"
QIICR · Mar 3, 2020 · 0cf2829 · 0cf2829
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diff --git a/doc/examples/pm-example-float.json b/doc/examples/pm-example-float.json
@@ -28,7 +28,7 @@
   },
   "SourceImageDiffusionBValues": ["0","1400"],
   "AnatomicRegionSequence": {
-    "CodeValue": "T-9200B",
+    "CodeValue": "41216001",
     "CodingSchemeDesignator": "SCT",
     "CodeMeaning": "Prostate"
   },

diff --git a/doc/examples/pm-example.json b/doc/examples/pm-example.json
@@ -28,7 +28,7 @@
   },
   "SourceImageDiffusionBValues": ["0","1400"],
   "AnatomicRegionSequence": {
-    "CodeValue": "T-9200B",
+    "CodeValue": "41216001",
     "CodingSchemeDesignator": "SCT",
     "CodeMeaning": "Prostate"
   },

diff --git a/doc/segContexts/AnatomicRegionAndModifier-DICOM-Master.json b/doc/segContexts/AnatomicRegionAndModifier-DICOM-Master.json
@@ -202,7 +202,7 @@
         "SNOMEDCTConceptID": "7832008"
       },
       {
-        "CodeValue": "T-41070",
+        "CodeValue": "7832008",
         "cid": "4030",
         "UMLSConceptUID": "C1283352",
         "CodeMeaning": "Abdominal aorta and its branches",
@@ -1154,7 +1154,7 @@
         "SNOMEDCTConceptID": ""
       },
       {
-        "CodeValue": "T-48052",
+        "CodeValue": "19715009",
         "cid": "12108",
         "UMLSConceptUID": "",
         "CodeMeaning": "Basilic vein",
@@ -2354,7 +2354,7 @@
         ]
       },
       {
-        "CodeValue": "T-45526",
+        "CodeValue": "11279006",
         "cid": "4030",
         "UMLSConceptUID": "C1284333",
         "CodeMeaning": "Circle of Willis",
@@ -2466,7 +2466,7 @@
         "SNOMEDCTConceptID": "71854001"
       },
       {
-        "CodeValue": "D4-31320",
+        "CodeValue": "253276007",
         "cid": "3010",
         "UMLSConceptUID": "C0018817",
         "CodeMeaning": "Common atrium",
@@ -2867,7 +2867,7 @@
         "SNOMEDCTConceptID": "25238003"
       },
       {
-        "CodeValue": "T-A0193",
+        "CodeValue": "128320002",
         "cid": "4030",
         "UMLSConceptUID": "C1280180",
         "CodeMeaning": "Cranial venous system",
@@ -3100,7 +3100,7 @@
         ]
       },
       {
-        "CodeValue": "T-47741",
+        "CodeValue": "86547008",
         "cid": "12109",
         "UMLSConceptUID": "",
         "CodeMeaning": "Dorsalis Pedis Artery",
@@ -3514,7 +3514,7 @@
         ]
       },
       {
-        "CodeValue": "T-1416B",
+        "CodeValue": "53967007",
         "cid": "6116",
         "UMLSConceptUID": "C0224353",
         "CodeMeaning": "External intercostal muscle",
@@ -5006,7 +5006,7 @@
         "SNOMEDCTConceptID": "34516001"
       },
       {
-        "CodeValue": "T-41040",
+        "CodeValue": "299716001",
         "cid": "4030",
         "UMLSConceptUID": "C1282078",
         "CodeMeaning": "Iliac arterial system",
@@ -5100,7 +5100,7 @@
         ]
       },
       {
-        "CodeValue": "T-48470",
+        "CodeValue": "195416006",
         "cid": "3010",
         "UMLSConceptUID": "C1267462",
         "CodeMeaning": "Inferior cardiac vein",
@@ -5731,7 +5731,7 @@
         ]
       },
       {
-        "CodeValue": "R-102BC",
+        "CodeValue": "698348000",
         "cid": "12105",
         "UMLSConceptUID": "",
         "CodeMeaning": "Internal Carotid Artery C6 segment",
@@ -5883,7 +5883,7 @@
         ]
       },
       {
-        "CodeValue": "T-14183",
+        "CodeValue": "41313007",
         "cid": "6116",
         "UMLSConceptUID": "C0224355",
         "CodeMeaning": "Internal intercostal muscle",
@@ -6288,7 +6288,7 @@
         "SNOMEDCTConceptID": "4596009"
       },
       {
-        "CodeValue": "T-49423",
+        "CodeValue": "714754004",
         "cid": "12110",
         "UMLSConceptUID": "",
         "CodeMeaning": "Lateral calf perforator",
@@ -6494,7 +6494,7 @@
         "SNOMEDCTConceptID": ""
       },
       {
-        "CodeValue": "T-4881F",
+        "CodeValue": "70253006",
         "cid": "12114",
         "UMLSConceptUID": "",
         "CodeMeaning": "Left Main Branch of Portal Vein",
@@ -6530,7 +6530,7 @@
         "SNOMEDCTConceptID": "76862008"
       },
       {
-        "CodeValue": "T-43126",
+        "CodeValue": "91760001",
         "cid": "3014",
         "UMLSConceptUID": "C0278433",
         "CodeMeaning": "Left Posterior Descending Artery",
@@ -10027,7 +10027,7 @@
         "SNOMEDCTConceptID": ""
       },
       {
-        "CodeValue": "T-4882A",
+        "CodeValue": "73931004",
         "cid": "12114",
         "UMLSConceptUID": "",
         "CodeMeaning": "Right Main Branch of Portal Vein",
@@ -10849,7 +10849,7 @@
         ]
       },
       {
-        "CodeValue": "T-11500",
+        "CodeValue": "421060004",
         "cid": "6114",
         "UMLSConceptUID": "C1267072",
         "CodeMeaning": "Spine",
@@ -12189,7 +12189,7 @@
         ]
       },
       {
-        "CodeValue": "T-4942C",
+        "CodeValue": "714759009",
         "cid": "12110",
         "UMLSConceptUID": "",
         "CodeMeaning": "Thigh perforator",
@@ -12514,7 +12514,7 @@
         "SNOMEDCTConceptID": ""
       },
       {
-        "CodeValue": "T-141A5",
+        "CodeValue": "88454005",
         "cid": "6116",
         "UMLSConceptUID": "C0224359",
         "CodeMeaning": "Transversus thoracis",
@@ -12740,7 +12740,7 @@
         ]
       },
       {
-        "CodeValue": "T-48817",
+        "CodeValue": "284639000",
         "cid": "12114",
         "UMLSConceptUID": "",
         "CodeMeaning": "Umbilical Vein",
@@ -12901,7 +12901,7 @@
         ]
       },
       {
-        "CodeValue": "T-70010",
+        "CodeValue": "431491007",
         "cid": "4040",
         "UMLSConceptUID": "C0729865",
         "CodeMeaning": "Upper urinary tract",

diff --git a/doc/segContexts/SegmentationCategoryTypeModifier-DICOM-Master.json b/doc/segContexts/SegmentationCategoryTypeModifier-DICOM-Master.json
@@ -2489,7 +2489,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "6114",
             "UMLSConceptUID": "C1267072",
-            "CodeValue": "T-11500",
+            "CodeValue": "421060004",
             "contextGroupName": "OsseousAnatomyFindingorFeature",
             "SNOMEDCTConceptID": "44300000"
           },
@@ -3772,7 +3772,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "6116",
             "UMLSConceptUID": "C0224353",
-            "CodeValue": "T-1416B",
+            "CodeValue": "53967007",
             "contextGroupName": "MuscularAnatomy",
             "SNOMEDCTConceptID": "244878003"
           },
@@ -3859,7 +3859,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "6116",
             "UMLSConceptUID": "C0224355",
-            "CodeValue": "T-14183",
+            "CodeValue": "41313007",
             "contextGroupName": "MuscularAnatomy",
             "SNOMEDCTConceptID": "244890001"
           },
@@ -3868,7 +3868,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "6116",
             "UMLSConceptUID": "C0224359",
-            "CodeValue": "T-141A5",
+            "CodeValue": "88454005",
             "contextGroupName": "MuscularAnatomy",
             "SNOMEDCTConceptID": "244933000"
           },
@@ -5934,7 +5934,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "3014",
             "UMLSConceptUID": "C0278433",
-            "CodeValue": "T-43126",
+            "CodeValue": "91760001",
             "contextGroupName": "CoronaryArterySegments",
             "SNOMEDCTConceptID": "56322004",
             "paired": "N"
@@ -6693,7 +6693,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "4030",
             "UMLSConceptUID": "C1284333",
-            "CodeValue": "T-45526",
+            "CodeValue": "11279006",
             "contextGroupName": "CT,MRandPETAnatomyImaged",
             "SNOMEDCTConceptID": "362047009"
           },
@@ -8091,7 +8091,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "3010",
             "UMLSConceptUID": "C0226661",
-            "CodeValue": "T-48440",
+            "CodeValue": "194996006",
             "contextGroupName": "CardiovascularAnatomicLocations",
             "SNOMEDCTConceptID": "43967001",
             "paired": "U"
@@ -8101,7 +8101,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "3010",
             "UMLSConceptUID": "C1267462",
-            "CodeValue": "T-48470",
+            "CodeValue": "195416006",
             "contextGroupName": "CardiovascularAnatomicLocations",
             "SNOMEDCTConceptID": "60477001"
           },
@@ -8381,7 +8381,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "3010",
             "UMLSConceptUID": "C1267489",
-            "CodeValue": "T-48817",
+            "CodeValue": "284639000",
             "contextGroupName": "CardiovascularAnatomicLocations",
             "SNOMEDCTConceptID": "61660003"
           },
@@ -8706,7 +8706,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "4",
             "UMLSConceptUID": "C0226896",
-            "CodeValue": "T-51000",
+            "CodeValue": "123851003",
             "contextGroupName": "AnatomicRegion",
             "SNOMEDCTConceptID": "21082005",
             "paired": "U"
@@ -9759,7 +9759,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "4031",
             "UMLSConceptUID": "C1278980",
-            "CodeValue": "T-9200B",
+            "CodeValue": "41216001",
             "contextGroupName": "CommonAnatomicRegions",
             "SNOMEDCTConceptID": "181422007"
           },
@@ -10147,7 +10147,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "4030",
             "UMLSConceptUID": "C1280180",
-            "CodeValue": "T-A0193",
+            "CodeValue": "128320002",
             "contextGroupName": "CT,MRandPETAnatomyImaged",
             "SNOMEDCTConceptID": "244391007"
           },
@@ -12510,7 +12510,7 @@
             "CodingSchemeDesignator": "SCT",
             "cid": "4",
             "UMLSConceptUID": "C0013443",
-            "CodeValue": "T-AB000",
+            "CodeValue": "117590005",
             "contextGroupName": "AnatomicRegion",
             "SNOMEDCTConceptID": "1910005",
             "paired": "Y",

diff --git a/doc/segContexts/SegmentationCategoryTypeModifier-SlicerGeneralAnatomy.json b/doc/segContexts/SegmentationCategoryTypeModifier-SlicerGeneralAnatomy.json
@@ -39,7 +39,7 @@
             "3dSlicerLabel": "artery",
             "cid": "7166",
             "UMLSConceptUID": "C0555806",
-            "CodeValue": "T-41066",
+            "CodeValue": "51114001",
             "contextGroupName": "Common Tissue Segmentation Types",
             "SNOMEDCTConceptID": "275989006",
             "3dSlicerIntegerLabel": 17
@@ -231,7 +231,7 @@
             "3dSlicerLabel": "organ",
             "cid": "7166",
             "UMLSConceptUID": "C1285092",
-            "CodeValue": "T-1A310",
+            "CodeValue": "113343008",
             "contextGroupName": "Common Tissue Segmentation Types",
             "SNOMEDCTConceptID": "2861001",
             "3dSlicerIntegerLabel": 6
@@ -295,7 +295,7 @@
             "3dSlicerLabel": "vein",
             "cid": "7166",
             "UMLSConceptUID": "C0447146",
-            "CodeValue": "T-4806E",
+            "CodeValue": "29092000",
             "contextGroupName": "Common Tissue Segmentation Types",
             "SNOMEDCTConceptID": "181378009",
             "3dSlicerIntegerLabel": 16