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Installation failed #47

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ShannonTown opened this issue Mar 11, 2021 · 2 comments
Closed

Installation failed #47

ShannonTown opened this issue Mar 11, 2021 · 2 comments

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@ShannonTown
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ShannonTown commented Mar 11, 2021 •
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Hello,

I'm having trouble installing the cytolib package. I have successfully installed the most recent RProtoBufLib but end up with the error below. I saw a similar issue closed in 2019, but it seems a different issue in my case. I'd appreciate any advice.

Thanks!
Shannon

install_github("RGLab/cytolib")
Downloading GitHub repo RGLab/cytolib@HEAD
√ checking for file 'C:\Users\lingfeir\AppData\Local\Temp\RtmpEB48K6\remotes3ae841782c3b\RGLab-cytolib-ed1f895/DESCRIPTION' (443ms)

  • preparing 'cytolib': (12.2s)
    √ checking DESCRIPTION meta-information ...
  • cleaning src
  • running 'cleanup.win'
  • checking for LF line-endings in source and make files and shell scripts (838ms)
  • checking for empty or unneeded directories (620ms)
  • building 'cytolib_2.3.8.tar.gz'
    Warning: file 'cytolib/cleanup' did not have execute permissions: corrected
    Warning: file 'cytolib/configure' did not have execute permissions: corrected
  • installing source package 'cytolib' ...
    ** using staged installation
    ** preparing to configure package 'cytolib' ...
    *** configured file: 'cytolibConfig.h.in' => 'inst/include/cytolib/cytolibConfig.h'
    *** configured file: 'src/Makevars.in' => 'src/Makevars'
    ** finished configure for package 'cytolib'
    ** libs
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dummy.cpp -o dummy.o
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40    1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/system/src/error_code.cpp -o boost/libs/system/src/error_code.o
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/portability.cpp -o boost/libs/filesystem/src/portability.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/path.hpp:29,
    from boost/libs/filesystem/src/portability.cpp:14:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::************
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not_::************
    ^
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40    1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/unique_path.cpp -o boost/libs/filesystem/src/unique_path.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/path.hpp:29,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/operations.hpp:26,
    from boost/libs/filesystem/src/unique_path.cpp:76:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::************
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not_::************
    ^
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/operations.cpp -o boost/libs/filesystem/src/operations.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/path.hpp:29,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/operations.hpp:26,
    from boost/libs/filesystem/src/operations.cpp:17:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::************
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not_::************
    ^
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40    1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/path.cpp -o boost/libs/filesystem/src/path.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/path.hpp:29,
    from boost/libs/filesystem/src/path.cpp:19:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::************
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not_::************
    ^
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/directory.cpp -o boost/libs/filesystem/src/directory.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/path.hpp:29,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/directory.hpp:26,
    from boost/libs/filesystem/src/directory.cpp:16:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::************
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not_::************
    ^
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40    1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/exception.cpp -o boost/libs/filesystem/src/exception.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/path.hpp:29,
    from boost/libs/filesystem/src/exception.cpp:15:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::************
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not_::************
    ^
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/windows_file_codecvt.cpp -o boost/libs/filesystem/src/windows_file_codecvt.o
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40    1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/utf8_codecvt_facet.cpp -o boost/libs/filesystem/src/utf8_codecvt_facet.o
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/codecvt_error_category.cpp -o boost/libs/filesystem/src/codecvt_error_category.o
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40    1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost/libs/filesystem/src/path_traits.cpp -o boost/libs/filesystem/src/path_traits.o
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/compensation.cpp -o src/compensation.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
    from ../inst/include/cytolib/transformation.hpp:18,
    from ../inst/include/cytolib/compensation.hpp:15,
    from src/compensation.cpp:3:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::************
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not_::************
    ^
    In file included from src/compensation.cpp:3:
    ../inst/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
    ../inst/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
    if(valVec.size() != 1+n+nn){
    ~~~~~~~~~~~~~~^~~~~~~~~~
    ../inst/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
    if(valVec.size() == 1+n+2    n*n){
    ~~~~~~~~~~~~~~^~~~~~~~~~~~
    ../inst/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
    for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
    ~~^~~~~~~~~~~~~~~~~~~~~
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40    1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/nodeProperties.cpp -o src/nodeProperties.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
    from ../inst/include/cytolib/transformation.hpp:18,
    from ../inst/include/cytolib/compensation.hpp:15,
    from ../inst/include/cytolib/CytoFrame.hpp:16,
    from ../inst/include/cytolib/MemCytoFrame.hpp:12,
    from ../inst/include/cytolib/gate.hpp:12,
    from ../inst/include/cytolib/POPINDICES.hpp:14,
    from ../inst/include/cytolib/nodeProperties.hpp:13,
    from src/nodeProperties.cpp:3:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::************
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not_::************
    ^
    In file included from ../inst/include/cytolib/CytoFrame.hpp:16,
    from ../inst/include/cytolib/MemCytoFrame.hpp:12,
    from ../inst/include/cytolib/gate.hpp:12,
    from ../inst/include/cytolib/POPINDICES.hpp:14,
    from ../inst/include/cytolib/nodeProperties.hpp:13,
    from src/nodeProperties.cpp:3:
    ../inst/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
    ../inst/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
    if(valVec.size() != 1+n+nn){
    ~~~~~~~~~~~~~~^~~~~~~~~~
    ../inst/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
    if(valVec.size() == 1+n+2    nn){
    ~~~~~~~~~~~~~~^~~~~~~~~~~~
    ../inst/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
    for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
    ~~^~~~~~~~~~~~~~~~~~~~~
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40~1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/gate.cpp -o src/gate.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux    /na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
    from ../inst/include/cytolib/transformation.hpp:18,
    from ../inst/include/cytolib/compensation.hpp:15,
    from ../inst/include/cytolib/CytoFrame.hpp:16,
    from ../inst/include/cytolib/MemCytoFrame.hpp:12,
    from ../inst/include/cytolib/gate.hpp:12,
    from src/gate.cpp:3:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::    ***********
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not    ::************
    ^
    In file included from ../inst/include/cytolib/CytoFrame.hpp:16,
    from ../inst/include/cytolib/MemCytoFrame.hpp:12,
    from ../inst/include/cytolib/gate.hpp:12,
    from src/gate.cpp:3:
    ../inst/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
    ../inst/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
    if(valVec.size() != 1+n+nn){
    ~~~~~~~~~~~~~~^~~~~~~~~~
    ../inst/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
    if(valVec.size() == 1+n+2    nn){
    ~~~~~~~~~~~~~~^~~~~~~~~~~~
    ../inst/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
    for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
    ~~^~~~~~~~~~~~~~~~~~~~~
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/in_polygon.cpp -o src/in_polygon.o
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40    1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/CytoFrame.cpp -o src/CytoFrame.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux    /na_assert.hpp:23,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
    from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
    from ../inst/include/cytolib/transformation.hpp:18,
    from ../inst/include/cytolib/compensation.hpp:15,
    from ../inst/include/cytolib/CytoFrame.hpp:16,
    from src/CytoFrame.cpp:3:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::    ***********
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not    ::************
    ^
    In file included from ../inst/include/cytolib/CytoFrame.hpp:16,
    from src/CytoFrame.cpp:3:
    ../inst/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
    ../inst/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
    if(valVec.size() != 1+n+nn){
    ~~~~~~~~~~~~~~^~~~~~~~~~
    ../inst/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
    if(valVec.size() == 1+n+2    nn){
    ~~~~~~~~~~~~~~^~~~~~~~~~~~
    ../inst/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
    for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
    ~~^~~~~~~~~~~~~~~~~~~~~
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40~1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/calibrationTable.cpp -o src/calibrationTable.o
    In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/foreach.hpp:76,
    from src/calibrationTable.cpp:5:
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
    failed ************ (Pred::    ***********
    ^
    C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
    failed ************ (boost::mpl::not    ::************
    ^
    "C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40~1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/MemCytoFrame.cpp -o src/MemCytoFrame.o
    src/MemCytoFrame.cpp:538: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
    #pragma omp parallel for

In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
from ../inst/include/cytolib/transformation.hpp:18,
from ../inst/include/cytolib/compensation.hpp:15,
from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from src/MemCytoFrame.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::************
^
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not_::************
^
In file included from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from src/MemCytoFrame.cpp:3:
../inst/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
../inst/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() != 1+n+nn){
~~~~~~~~~~~~~~^~~~~~~~~~
../inst/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() == 1+n+2nn){
~~~~~~~~~~~~~~^~~~~~~~~~~~
../inst/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
~~^~~~~~~~~~~~~~~~~~~~~
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40~1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/POPINDICES.cpp -o src/POPINDICES.o
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux/na_assert.hpp:23,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
from ../inst/include/cytolib/transformation.hpp:18,
from ../inst/include/cytolib/compensation.hpp:15,
from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from ../inst/include/cytolib/gate.hpp:12,
from ../inst/include/cytolib/POPINDICES.hpp:14,
from src/POPINDICES.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::***********
^
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not::************
^
In file included from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from ../inst/include/cytolib/gate.hpp:12,
from ../inst/include/cytolib/POPINDICES.hpp:14,
from src/POPINDICES.cpp:3:
../inst/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
../inst/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::_cxx11::basic_string, std::allocator<std::cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() != 1+n+nn){
~~~~~~~~~~~~~~^~~~~~~~~~
../inst/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() == 1+n+2nn){
~~~~~~~~~~~~~~^~~~~~~~~~~~
../inst/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
~~^~~~~~~~~~~~~~~~~~~~~
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40~1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/CytoVFS.cpp -o src/CytoVFS.o
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux/na_assert.hpp:23,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/path.hpp:29,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem.hpp:16,
from ../inst/include/cytolib/CytoVFS.hpp:17,
from src/CytoVFS.cpp:8:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::***********
^
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not::************
^
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40~1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/GatingSet.cpp -o src/GatingSet.o
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux/na_assert.hpp:23,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
from ../inst/include/cytolib/transformation.hpp:18,
from ../inst/include/cytolib/compensation.hpp:15,
from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from ../inst/include/cytolib/gate.hpp:12,
from ../inst/include/cytolib/POPINDICES.hpp:14,
from ../inst/include/cytolib/nodeProperties.hpp:13,
from ../inst/include/cytolib/populationTree.hpp:13,
from ../inst/include/cytolib/GatingHierarchy.hpp:17,
from ../inst/include/cytolib/GatingSet.hpp:14,
from src/GatingSet.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::************
^
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not::************
^
In file included from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from ../inst/include/cytolib/gate.hpp:12,
from ../inst/include/cytolib/POPINDICES.hpp:14,
from ../inst/include/cytolib/nodeProperties.hpp:13,
from ../inst/include/cytolib/populationTree.hpp:13,
from ../inst/include/cytolib/GatingHierarchy.hpp:17,
from ../inst/include/cytolib/GatingSet.hpp:14,
from src/GatingSet.cpp:3:
../inst/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
../inst/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::_cxx11::basic_string, std::allocator<std::cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() != 1+n+nn){
~~~~~~~~~~~~~~^~~~~~~~~~
../inst/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() == 1+n+2nn){
~~~~~~~~~~~~~~^~~~~~~~~~~~
../inst/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
^~~~~~~~~~~~~~~~~~~~~
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/graph/adjacency_iterator.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/graph/detail/adjacency_list.hpp:37,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/graph/adjacency_list.hpp:255,
from ../inst/include/cytolib/populationTree.hpp:14,
from ../inst/include/cytolib/GatingHierarchy.hpp:17,
from ../inst/include/cytolib/GatingSet.hpp:14,
from src/GatingSet.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/detail/iterator.hpp: At global scope:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/detail/iterator.hpp:13:37: note: #pragma message: This header is deprecated. Use instead.
BOOST_HEADER_DEPRECATED("")
^
In file included from ../inst/include/cytolib/compensation.hpp:19,
from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from ../inst/include/cytolib/gate.hpp:12,
from ../inst/include/cytolib/POPINDICES.hpp:14,
from ../inst/include/cytolib/nodeProperties.hpp:13,
from ../inst/include/cytolib/populationTree.hpp:13,
from ../inst/include/cytolib/GatingHierarchy.hpp:17,
from ../inst/include/cytolib/GatingSet.hpp:14,
from src/GatingSet.cpp:3:
../inst/include/cytolib/global.hpp: In constructor 'cytolib::GatingSet::GatingSet(std::__cxx11::string, bool, bool, std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >, bool, cytolib::CytoCtx)':
../inst/include/cytolib/global.hpp:29:3: warning: 'fmt' may be used uninitialized in this function [-Wmaybe-uninitialized]
switch(fmt)
^~~~~~
src/GatingSet.cpp:30:14: note: 'fmt' was declared here
FileFormat fmt;
^
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40~1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/transformation.cpp -o src/transformation.o
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux/na_assert.hpp:23,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
from ../inst/include/cytolib/transformation.hpp:18,
from src/transformation.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::***********
^
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not::************
^
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/ellipse2points.cpp -o src/ellipse2points.o
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/H5CytoFrame.cpp -o src/H5CytoFrame.o
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux/na_assert.hpp:23,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
from ../inst/include/cytolib/transformation.hpp:18,
from ../inst/include/cytolib/compensation.hpp:15,
from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from ../inst/include/cytolib/H5CytoFrame.hpp:12,
from src/H5CytoFrame.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::************
^
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not::************
^
In file included from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from ../inst/include/cytolib/H5CytoFrame.hpp:12,
from src/H5CytoFrame.cpp:3:
../inst/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
../inst/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::_cxx11::basic_string, std::allocator<std::cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() != 1+n+nn){
~~~~~~~~~~~~~~^~~~~~~~~~
../inst/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() == 1+n+2nn){
~~~~~~~~~~~~~~^~~~~~~~~~~~
../inst/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string, std::allocator<std::_cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
~~^~~~~~~~~~~~~~~~~~~~~
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40~1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/trans_group.cpp -o src/trans_group.o
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux/na_assert.hpp:23,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
from ../inst/include/cytolib/transformation.hpp:18,
from ../inst/include/cytolib/trans_group.hpp:13,
from src/trans_group.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::***********
^
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not::************
^
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/spline.cpp -o src/spline.o
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-401.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/global.cpp -o src/global.o
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux/na_assert.hpp:23,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem/path.hpp:29,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/filesystem.hpp:16,
from ../inst/include/cytolib/CytoVFS.hpp:17,
from ../inst/include/cytolib/global.hpp:21,
from src/global.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::************
^
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not::************
^
src/global.cpp: In function 'std::__cxx11::string cytolib::s3_to_http(std::__cxx11::string)':
src/global.cpp:46:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::cxx11::basic_string >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 1; i < tokens.size(); i++)
~~^~~~~~~~~~~~~~~
"C:/ProgramFiles/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/ProgramFiles/R/R-40~1.0/include" -DNDEBUG -DROUT -I../inst/include -DRCPP_PARALLEL_USE_TBB=1 -fpermissive -DBOOST_NO_AUTO_PTR -I'C:/ProgramFiles/R/R-4.0.0/library/Rcpp/include' -I'C:/ProgramFiles/R/R-4.0.0/library/BH/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RProtoBufLib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/Rhdf5lib/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppArmadillo/include' -I'C:/ProgramFiles/R/R-4.0.0/library/RcppParallel/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c src/GatingHierarchy.cpp -o src/GatingHierarchy.o
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/aux/na_assert.hpp:23,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/arg.hpp:25,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range_core.hpp:27,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/iterator_range.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/range/as_literal.hpp:18,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string/trim.hpp:19,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/algorithm/string.hpp:19,
from ../inst/include/cytolib/transformation.hpp:18,
from ../inst/include/cytolib/compensation.hpp:15,
from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from ../inst/include/cytolib/gate.hpp:12,
from ../inst/include/cytolib/POPINDICES.hpp:14,
from ../inst/include/cytolib/nodeProperties.hpp:13,
from ../inst/include/cytolib/populationTree.hpp:13,
from ../inst/include/cytolib/GatingHierarchy.hpp:17,
from src/GatingHierarchy.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::************
^
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not::************
^
In file included from ../inst/include/cytolib/CytoFrame.hpp:16,
from ../inst/include/cytolib/MemCytoFrame.hpp:12,
from ../inst/include/cytolib/gate.hpp:12,
from ../inst/include/cytolib/POPINDICES.hpp:14,
from ../inst/include/cytolib/nodeProperties.hpp:13,
from ../inst/include/cytolib/populationTree.hpp:13,
from ../inst/include/cytolib/GatingHierarchy.hpp:17,
from src/GatingHierarchy.cpp:3:
../inst/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
../inst/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() != 1+n+nn){
~~~~~~~~~~~~~~^~~~~~~~~~
../inst/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
if(valVec.size() == 1+n+2n*n){
~~~~~~~~~~~~~~^~~~~~~~~~~~
../inst/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string, std::allocator<std::__cxx11::basic_string > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
~~^~~~~~~~~~~~~~~~~~~~~
In file included from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/graph/adjacency_iterator.hpp:13,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/graph/detail/adjacency_list.hpp:37,
from C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/graph/adjacency_list.hpp:255,
from ../inst/include/cytolib/populationTree.hpp:14,
from ../inst/include/cytolib/GatingHierarchy.hpp:17,
from src/GatingHierarchy.cpp:3:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/detail/iterator.hpp: At global scope:
C:/ProgramFiles/R/R-4.0.0/library/BH/include/boost/detail/iterator.hpp:13:37: note: #pragma message: This header is deprecated. Use instead.
BOOST_HEADER_DEPRECATED("")
@bradleyed bradleyed mentioned this issue Mar 12, 2021
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@mikejiang
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I've pushed the patch and try again.

@ShannonTown
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Hi Mike,

It worked. I was able to install Cytolib and all the related packages. Thank you so much!!

Shannon

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@mikejiang @ShannonTown