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xtimer: timer already in the list #4841

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immesys opened this issue Feb 17, 2016 · 24 comments
Closed

xtimer: timer already in the list #4841

immesys opened this issue Feb 17, 2016 · 24 comments
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Area: timers Area: timer subsystems Type: bug The issue reports a bug / The PR fixes a bug (including spelling errors)

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@immesys
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immesys commented Feb 17, 2016

I initially reported this on the mailing list, but I figured I should add an issue.

I was getting strange lockups on my nodes, and managed to work out that a timer was being inserted into the list when it was already in the list, which would cause an infinite loop here

I modified the function with this inside the while loop:

if (*list_head == timer || (*list_head)->next == timer){
   disableIRQ();
   while(1);
}

And waited to see where the invocation was coming from. It triggered (on the second condition in the if statement), and this was the call chain:

#0  _add_timer_to_list (list_head=0x200021ac <sampling_stack+1755>, list_head@entry=0x20000630 <timer_list_head>, timer=timer@entry=0x2000148c <comms_stack+1832>) at //sys/xtimer/xtimer_core.c:226
#1  0x00000d12 in _xtimer_set_absolute (timer=0x2000148c <comms_stack+1832>, target=1963159872) at //sys/xtimer/xtimer_core.c:197
#2  0x00000dec in xtimer_set (timer=timer@entry=0x2000148c <comms_stack+1832>, offset=offset@entry=1000000) at //sys/xtimer/xtimer_core.c:133
#3  0x00000a4e in xtimer_set_msg (target_pid=<optimized out>, msg=0x20001484 <comms_stack+1824>, offset=1000000, timer=0x2000148c <comms_stack+1832>) at //sys/xtimer/xtimer.c:124
#4  xtimer_msg_receive_timeout (msg=msg@entry=0x200014bc <comms_stack+1880>, us=us@entry=1000000) at //sys/xtimer/xtimer.c:200
#5  0x00001c94 in comms (arg=<optimized out>) at //Apps/accel/main.c:192
#6  0x00000288 in sched_switch (other_prio=<optimized out>) at //core/sched.c:180
#7  0x20001404 in comms_stack ()

The comms thread looks basically like this (I am working on isolated reproducer):

msg_t dns_msg; //type set to MSG_TYPE_DNS_TIMER once in main
xtimer_t dns_timer; //nobody else uses this
void *comms(void *arg)
{
  msg_t msg;
  msg_init_queue(_comms_msg_queue, COMMS_QUEUE_SIZE);
  gnrc_netreg_entry_t entry = { NULL, 4041, thread_getpid() };
  gnrc_netreg_register(GNRC_NETTYPE_UDP, &entry))
  while(1) {
    if (xtimer_msg_receive_timeout(&msg, NETWORK_MAXRTT_US) < 0)
      msg.type = MSG_TYPE_MUST_TX; //default to resending old packet
    switch(msg.type) {
      case GNRC_NETAPI_MSG_TYPE_RCV: {
          /* snip */
          gnrc_pktbuf_release((gnrc_pktsnip_t *) msg.content.ptr);
          //Deliberately do not break
      }
      case MSG_TYPE_MUST_TX: { //Sent every ~100ms from sampling_thread
          /* snip building packet 'ip' */
          gnrc_netapi_dispatch_send(GNRC_NETTYPE_UDP, GNRC_NETREG_DEMUX_CTX_ALL, ip)
          break;
      }
      case MSG_TYPE_DNS_TIMER: { //sent once by main, otherwise only to ourselves
        update_dns_record(); //Sends a UDP packet, like above
        xtimer_set_msg(&dns_timer, DNS_INTERVAL, &dns_msg, thread_getpid());
        break;
      }
    } //end switch
  } //end while
} //endfun

So essentially the xtimer_msg_receive_timeout(&msg, NETWORK_MAXRTT_US) is sometimes causing a stack-allocated timer to appear in the timer list twice. This is pretty interesting considering that there is a call to remove the timer earlier in the call chain, although they are in different critical sections, so maybe something is happening between them.

I will do my best to reproduce this with a small application that runs on the SAMR21-xpro.

Also, apologies if this is user error, I am still getting the hang of RIOT.

@OlegHahm OlegHahm added the Type: bug The issue reports a bug / The PR fixes a bug (including spelling errors) label Feb 17, 2016
@kaspar030
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I managed to trigger a timer that is twice in xtimer's list, but by intentionally setting the same timer concurrently from user and ISR context.

@immesys Did you succeed in creating a small reproducer? Or can you share the rest of your code somehow?

@OlegHahm OlegHahm added TimerTaskForce Area: timers Area: timer subsystems labels Feb 24, 2016
@OlegHahm OlegHahm added this to the Release 2016.03 milestone Feb 24, 2016
@immesys
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immesys commented Mar 9, 2016

I think I hit this problem again, and I have #4903 in my code base. Has someone else tested this? It's certainly less frequent though

@kaspar030
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My ISR hammering test case breaks without #4903, and runs fine with it. I didn't succeed in triggering it with #4903 included. @immesys does your code break using the same guard?

@immesys
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immesys commented Mar 10, 2016

I think it might have something to do with my debugger actually. Does the chip (SAMR21) behave differently when a JTAG probe is attached?

Anyway, as I can't really reliably reproduce the problem, I'd say go ahead with merging it in. I'll come back and do more testing when I get a chance but it will probably only be in a few weeks.

edit: for the record though, whenever I got the lockup, the backtrace was in _remove.

@kaspar030
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As noone currently can reproduce, I'll retag for next release.

@kaspar030 kaspar030 modified the milestones: Release 2016.07, Release 2016.04 Apr 1, 2016
@OlegHahm
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OlegHahm commented May 2, 2016

I managed to trigger a timer that is twice in xtimer's list, but by intentionally setting the same timer concurrently from user and ISR context.

Is this still a problem?

@OlegHahm
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OlegHahm commented May 2, 2016

Btw currently it looks like that replacing the xtimer_msg_receive_timeout() with a simple msg_receive() "solved" the problem. Hence, we should take a closer look at this function.

@kaspar030
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Is this still a problem?

In theory it might still happen when concurrently setting the same timer with values < XTIMER_BACKOFF. #4903 fixed this only for some (most) cases.

@kaspar030
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Probably fixed by #5428.

@kYc0o
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kYc0o commented Jul 26, 2016

Since #5428 is open and probably won't be merged for this release, I'll postpone this issue.

@kYc0o kYc0o modified the milestones: Release 2016.10, Release 2016.07 Jul 26, 2016
miri64 added a commit that referenced this issue Nov 11, 2016
RIOT-2016.10 - Release Notes
============================
RIOT is a real-time multi-threading operating system that supports a range of
devices that are typically found in the Internet of Things: 8-bit
microcontrollers, 16-bit microcontrollers and light-weight 32-bit processors.

RIOT is based on the following design principles: energy-efficiency, real-time
capabilities, small memory footprint, modularity, and uniform API access,
independent of the underlying hardware (this API offers partial POSIX
compliance).

RIOT is developed by an international open source community which is
independent of specific vendors (e.g. similarly to the Linux community) and is
licensed with a non-viral copyleft license (LGPLv2.1), which allows indirect
business models around the free open-source software platform provided by
RIOT.

About this release:
===================
This release provides a lot of new features as well as it  fixes several major
bugs. Among these new features are the new simplified network socket API
called sock, the GNRC specific CoAP implementation gcoap and several new
packages: TinyDTLS, the Aversive++ microcontroller library for robotics, the
u8g2 graphic library, and nanocoap.
Using the new sock API an implementation of the Simple Time Network Protocol
(SNTP) was also introduced, allowing for time synchronization between nodes.
New platforms include the Arduino Uno, the Arduino Duemilanove, the Arduino
Zero, SODAQ Autonomo, and the Zolertia remote (rev. B).
The most significant bug fix was done in native which led to a significantly
more robust handling of ISRs and now allows for at least 1,000 native
instances running stably on one machine.

About 263 pull requests with about 398 commits have been merged since the last
release and about 42 issues have been solved. 37 people contributed with code
in 100 days. 1006 files have been touched with 166500 insertions and 26926
deletions.

Notations used below:
=====================
+ means new feature/item
* means modified feature/item
- means removed feature/item

New features and changes
========================
General
-------
* Verbose behavior for assert() macro

Core
----
+ MPU support for Cortex-M

API changes
-----------
+ Socket-like sock API (replacing conn)
* netdev2: Add Testmodes and CCA modes
* IEEE 802.15.4: clean-up Intra-PAN behavior
* IEEE 802.15.4: centralize default values
* gnrc_pktbuf: allow for 0-sized snips
+ gnrc_netapi: mbox and arbitrary callback support

System libraries
----------------
No new features or changes

Networking
----------
+ Provide sock-port for GNRC
+ gcoap: a GNRC-based CoAP implementation
+ Simple Network Time Protocol (RFC 5905, section 14)
+ Priority Queue for packet snips
+ IPv4 header definitions

Packages
--------
+ nanocoap: CoAP header parser/builder
+ TinyDTLS: DTLS library
+ tiny-asn1: asn.1/der decoder
+ Aversive++ microcontroller programming library
+ u8g2 graphic library

Platforms
---------
+ Support for stm32f2xx MCU family
+ Low power modes for samd21 CPUs
+ More Arduino-based platforms:
    + Arduino Uno
    + Arduino Duemilanove
    + Arduino Zero
+ More boards of ST's Nucleo platforms:
    + ST Nucleo F030 board support
    + ST Nucleo F070 board support
    + ST Nucleo F446 board support
+ SODAQ Automono
+ Zolertia remote rev. B

Drivers
-------
+ W5100 Ethernet device
+ Atmel IO1 Xplained extension
+ LPD8808 LED strips
* at86rf2xx: provide capability to access the RND_VALUE random value register

Build System
------------
+ static-tests build target for easy local execution of CI's static tests

Other
-----
+ Provide Arduino API to Nucleo boards
+ Packer configuration file to build vagrant boxes
+ CC2650STK Debugger Support
+ ethos: add Ethos over TCP support

Fixed Issues from the last release
==================================
 #534:  native debugging on osx fails
 #2071: native: *long* overdue fixes
 #3341: netdev2_tap crashes when hammered
 #5007: gnrc icmpv6: Ping reply goes out the wrong interface
 #5432: native: valgrind fails

Known Issues
============
Networking related issues
-------------------------
 #3075: nhdp: unnecessary microsecond precision: NHDP works with timer values
       of microsecond precision which is not required. Changing to lower
       precision would save some memory.
 #4048: potential racey memory leak: According to the packet buffer stats,
       flood-pinging a multicast destination may lead to a memory leak due to
       a race condition. However, it seems to be a rare case and a completely
       filled up packet buffer was not observed.
 #4388: POSIX sockets: open socket is bound to a specific thread: This was an
       inherit problem of the conn API under GNRC. Since the POSIX sockets are
       still based on conn for this release, this issue persists
 #4527: gnrc_ipv6: Multicast is not forwarded if routing node listens to the
       address (might still be fixable for release, see #5729, #5230: gnrc
       ipv6: multicast packets are not dispatched to the upper layers)
 #5016: gnrc_rpl: Rejoining RPL instance as root after reboot messes up routing
 #5055: cpuid: multiple radios will get same EUI-64 Nodes with multiple
       interfaces might get the same EUI-64 for them since they are generated
       from the same CPU ID.
 #5656: Possible Weakness with locking in the GNRC network stack: For some
       operations mutexes to the network interfaces need to get unlocked in
       the current implementation to not get deadlocked. Recursive mutexes as
       provided in #5731 might help to solve this problem.
 #5748: gnrc: nodes crashing with too small packet buffer: A packet buffer of
       size ~512 B might lead to crashes. The issue describes this for several
       hundret nodes, but agressive flooding with just two nodes was also
       shown to lead to this problem.
 #5858: gnrc: 6lo: potential problem with reassembly of fragments: If one frame
       gets lost the reassembly state machine might get out of sync

 ### NDP is not working properly
 #4499: handle of l2src_len in gnrc_ndp_rtr_sol_handle: Reception of a router
       solicitation might lead to invalid zero-length link-layer addresses in
       neighbor cache.
 #5005: ndp: router advertisement sent with global address: Under some
       circumstances a router might send RAs with GUAs. While they are ignored
       on receive (as RFC 4861 specifies), RAs should have link-local
       addresses and not even be send out this way.
 #5122: NDP: global unicast address on non-6LBR nodes disappears after a while:
       Several issues (also see #5760) lead to a global unicast address
       effectively being banned from the network (disappears from neighbor
       cache, is not added again)
 #5467: ipv6 address vanishes when ARO (wrongly) indicates DUP caused by
       outdated ncache at router
 #5539: Border Router: packet not forwarded from ethos to interface 6
 #5790: ND: Lost of Global IPV6 on node after sending lot of UDP frame from BR

Timer related issues
--------------------
 #4841: xtimer: timer already in the list: Under some conditions an xtimer can
       end up twice in the internal list of the xtimer module
 #4902: xtimer: xtimer_set: xtimer_set does not handle integer overflows well
 #5338: xtimer: xtimer_now() not ISR safe for non-32-bit platforms.
 #5928: xtimer: usage in board_init() crashes: some boards use the xtimer in
       there board_init() function. The xtimer is however first initialized in
       the auto_init module which is executed after board_init()
 #6052: tests: xtimer_drift gets stuck: xtimer_drift application freezes after
       ~30-200 seconds

native related issues
---------------------
 #495:  native not float safe: When the FPU is used when an asynchronous context
       switch occurs, either the stack gets corrupted or a floating point
       exception occurs.
 #2175: ubjson: valgind registers "Invalid write of size 4" in unittests
 #4590: pkg: building relic with clang fails.
 #5796: native: tlsf: early malloc will lead to a crash: TLSF needs pools to be
       initialized (which is currently expected to be done in an application).
       If a malloc is needed before an application's main started (e.g. driver
       initialization) the node can crash, since no pool is allocated yet.

other platform related issues
-----------------------------
 #1891: newlib-nano: Printf formatting does not work properly for some numberic
       types: PRI[uxdi]64, PRI[uxdi]8 and float are not parsed in newlib-nano
 #2006: cpu/nrf51822: timer callback may be fired too early
 #2143: unittests: tests-core doesn't compile for all platforms: GCC build-ins
       were used in the unittests which are not available with msp430-gcc
 #2300: qemu unittest fails because of a page fault
 #4512: pkg: tests: RELIC unittests fail on iotlab-m3
 #4522: avsextrem: linker sometimes doesn't find `bl_init_clks()`
 #4560: make: clang is more pedantic than gcc oonf_api is not building with
       clang. (Partly solved by #4593)
 #4694: drivers/lm75a: does not build
 #4737: cortex-m: Hard fault after a thread exits (under some circumstances)
 #4822: kw2xrf: packet loss when packets get fragmented
 #4876: at86rf2xx: Simultaneous use of different transceiver types is not
       supported
 #4954: chronos: compiling with -O0 breaks
 #4866: not all GPIO driver implementations are thread safe: Due to non-atomic
       operations in the drivers some pin configurations might get lost.
 #5009: RIOT is saw-toothing in energy consumption (even when idling)
 #5103: xtimer: weird behavior of tests/xtimer_drift: xtimer_drift randomly
       jumps a few seconds on nrf52
 #5361: cpu/cc26x0: timer broken
 #5405: Eratic timings on iotlab-m3 with compression context activated
 #5460: cpu/samd21: i2c timing with compiler optimization
 #5486: at86rf2xx: lost interrupts
 #5489: cpu/lpc11u34: ADC broken
 #5603: atmega boards second UART issue
 #5678: at86rf2xx: failed assertion in _isr
 #5719: cc2538: rf driver doesn't handle large packets
 #5799: kw2x: 15.4 duplicate transmits
 #5944: msp430: ipv6_hdr unittests fail
 #5848: arduino: Race condition in sys/arduino/Makefile.include
 #5954: nRF52 uart_write get stuck
 #6018: nRF52 gnrc 6lowpan ble memory leak

other issues
------------
 #1263: TLSF implementation contains (a) read-before-write error(s).
 #3256: make: Setting constants on compile time doesn't really set them
       everywhere
 #3366: periph/i2c: handle NACK
 #4488: Making the newlib thread-safe: When calling puts/printf after
       thread_create(), the CPU hangs for DMA enabled uart drivers.
 #4866: periph: GPIO drivers are not thread safe
 #5128: make: buildtest breaks when exporting FEATURES_PROVIDED var
 #5207: make: buildest fails with board dependent application Makefiles
 #5390: pkg: OpenWSN does not compile: This package still uses deprecated
       modules and was not tested for a long time.
 #5520: tests/periph_uart not working
 #5561: C++11 extensions in header files
 #5776: make: Predefining CFLAGS are parsed weirdly
 #5863: OSX +  SAMR21-xpro: shell cannot handle command inputs larger than 64
       chars
 #5962: Makefile: UNDEF variable is not working as documented
 #6022: pkg: build order issue

Special Thanks
==============
We like to give our special thanks to all the companies that provided us with
their hardware for porting and testing, namely the people from (in
alphabeticalorder): Atmel, Freescale, Imagination Technologies, Limifrog,
Nordic, OpenMote, Phytec, SiLabs, UDOO,and Zolertia; and also companies that
directly sponsored development time: Cisco Systems, Eistec, Ell-i, Enigeering
Spirit, Nordic, FreshTemp LLC, OTAkeys and Phytec.

More information
================
http://www.riot-os.org

Mailing lists
-------------
* RIOT OS kernel developers list
  devel@riot-os.org (http://lists.riot-os.org/mailman/listinfo/devel)
* RIOT OS users list
  users@riot-os.org (http://lists.riot-os.org/mailman/listinfo/users)
* RIOT commits
  commits@riot-os.org (http://lists.riot-os.org/mailman/listinfo/commits)
* Github notifications
  notifications@riot-os.org (http://lists.riot-os.org/mailman/listinfo/notifications)

IRC
---
* Join the RIOT IRC channel at: irc.freenode.net, #riot-os

License
=======
* Most of the code developed by the RIOT community is licensed under the GNU
  Lesser General Public License (LGPL) version 2.1 as published by the Free
  Software Foundation.
* Some external sources are published under a separate, LGPL compatible
  license (e.g. some files developed by SICS).

All code files contain licensing information.
miri64 added a commit that referenced this issue Nov 11, 2016
RIOT-2016.10 - Release Notes
============================
RIOT is a real-time multi-threading operating system that supports a range of
devices that are typically found in the Internet of Things: 8-bit
microcontrollers, 16-bit microcontrollers and light-weight 32-bit processors.

RIOT is based on the following design principles: energy-efficiency, real-time
capabilities, small memory footprint, modularity, and uniform API access,
independent of the underlying hardware (this API offers partial POSIX
compliance).

RIOT is developed by an international open source community which is
independent of specific vendors (e.g. similarly to the Linux community) and is
licensed with a non-viral copyleft license (LGPLv2.1), which allows indirect
business models around the free open-source software platform provided by
RIOT.

About this release:
===================
This release provides a lot of new features as well as it  fixes several major
bugs. Among these new features are the new simplified network socket API
called sock, the GNRC specific CoAP implementation gcoap and several new
packages: TinyDTLS, the Aversive++ microcontroller library for robotics, the
u8g2 graphic library, and nanocoap.
Using the new sock API an implementation of the Simple Time Network Protocol
(SNTP) was also introduced, allowing for time synchronization between nodes.
New platforms include the Arduino Uno, the Arduino Duemilanove, the Arduino
Zero, SODAQ Autonomo, and the Zolertia remote (rev. B).
The most significant bug fix was done in native which led to a significantly
more robust handling of ISRs and now allows for at least 1,000 native
instances running stably on one machine.

About 263 pull requests with about 398 commits have been merged since the last
release and about 42 issues have been solved. 37 people contributed with code
in 100 days. 1006 files have been touched with 166500 insertions and 26926
deletions.

Notations used below:
=====================
+ means new feature/item
* means modified feature/item
- means removed feature/item

New features and changes
========================
General
-------
* Verbose behavior for assert() macro

Core
----
+ MPU support for Cortex-M

API changes
-----------
+ Socket-like sock API (replacing conn)
* netdev2: Add Testmodes and CCA modes
* IEEE 802.15.4: clean-up Intra-PAN behavior
* IEEE 802.15.4: centralize default values
* gnrc_pktbuf: allow for 0-sized snips
+ gnrc_netapi: mbox and arbitrary callback support

System libraries
----------------
No new features or changes

Networking
----------
+ Provide sock-port for GNRC
+ gcoap: a GNRC-based CoAP implementation
+ Simple Network Time Protocol (RFC 5905, section 14)
+ Priority Queue for packet snips
+ IPv4 header definitions

Packages
--------
+ nanocoap: CoAP header parser/builder
+ TinyDTLS: DTLS library
+ tiny-asn1: asn.1/der decoder
+ Aversive++ microcontroller programming library
+ u8g2 graphic library

Platforms
---------
+ Support for stm32f2xx MCU family
+ Low power modes for samd21 CPUs
+ More Arduino-based platforms:
    + Arduino Uno
    + Arduino Duemilanove
    + Arduino Zero
+ More boards of ST's Nucleo platforms:
    + ST Nucleo F030 board support
    + ST Nucleo F070 board support
    + ST Nucleo F446 board support
+ SODAQ Automono
+ Zolertia remote rev. B

Drivers
-------
+ W5100 Ethernet device
+ Atmel IO1 Xplained extension
+ LPD8808 LED strips
* at86rf2xx: provide capability to access the RND_VALUE random value register

Build System
------------
+ static-tests build target for easy local execution of CI's static tests

Other
-----
+ Provide Arduino API to Nucleo boards
+ Packer configuration file to build vagrant boxes
+ CC2650STK Debugger Support
+ ethos: add Ethos over TCP support

Fixed Issues from the last release
==================================
 #534:  native debugging on osx fails
 #2071: native: *long* overdue fixes
 #3341: netdev2_tap crashes when hammered
 #5007: gnrc icmpv6: Ping reply goes out the wrong interface
 #5432: native: valgrind fails

Known Issues
============
Networking related issues
-------------------------
 #3075: nhdp: unnecessary microsecond precision: NHDP works with timer values
       of microsecond precision which is not required. Changing to lower
       precision would save some memory.
 #4048: potential racey memory leak: According to the packet buffer stats,
       flood-pinging a multicast destination may lead to a memory leak due to
       a race condition. However, it seems to be a rare case and a completely
       filled up packet buffer was not observed.
 #4388: POSIX sockets: open socket is bound to a specific thread: This was an
       inherit problem of the conn API under GNRC. Since the POSIX sockets are
       still based on conn for this release, this issue persists
 #4527: gnrc_ipv6: Multicast is not forwarded if routing node listens to the
       address (might still be fixable for release, see #5729, #5230: gnrc
       ipv6: multicast packets are not dispatched to the upper layers)
 #5016: gnrc_rpl: Rejoining RPL instance as root after reboot messes up routing
 #5055: cpuid: multiple radios will get same EUI-64 Nodes with multiple
       interfaces might get the same EUI-64 for them since they are generated
       from the same CPU ID.
 #5656: Possible Weakness with locking in the GNRC network stack: For some
       operations mutexes to the network interfaces need to get unlocked in
       the current implementation to not get deadlocked. Recursive mutexes as
       provided in #5731 might help to solve this problem.
 #5748: gnrc: nodes crashing with too small packet buffer: A packet buffer of
       size ~512 B might lead to crashes. The issue describes this for several
       hundret nodes, but agressive flooding with just two nodes was also
       shown to lead to this problem.
 #5858: gnrc: 6lo: potential problem with reassembly of fragments: If one frame
       gets lost the reassembly state machine might get out of sync

 ### NDP is not working properly
 #4499: handle of l2src_len in gnrc_ndp_rtr_sol_handle: Reception of a router
       solicitation might lead to invalid zero-length link-layer addresses in
       neighbor cache.
 #5005: ndp: router advertisement sent with global address: Under some
       circumstances a router might send RAs with GUAs. While they are ignored
       on receive (as RFC 4861 specifies), RAs should have link-local
       addresses and not even be send out this way.
 #5122: NDP: global unicast address on non-6LBR nodes disappears after a while:
       Several issues (also see #5760) lead to a global unicast address
       effectively being banned from the network (disappears from neighbor
       cache, is not added again)
 #5467: ipv6 address vanishes when ARO (wrongly) indicates DUP caused by
       outdated ncache at router
 #5539: Border Router: packet not forwarded from ethos to interface 6
 #5790: ND: Lost of Global IPV6 on node after sending lot of UDP frame from BR

Timer related issues
--------------------
 #4841: xtimer: timer already in the list: Under some conditions an xtimer can
       end up twice in the internal list of the xtimer module
 #4902: xtimer: xtimer_set: xtimer_set does not handle integer overflows well
 #5338: xtimer: xtimer_now() not ISR safe for non-32-bit platforms.
 #5928: xtimer: usage in board_init() crashes: some boards use the xtimer in
       there board_init() function. The xtimer is however first initialized in
       the auto_init module which is executed after board_init()
 #6052: tests: xtimer_drift gets stuck: xtimer_drift application freezes after
       ~30-200 seconds

native related issues
---------------------
 #495:  native not float safe: When the FPU is used when an asynchronous context
       switch occurs, either the stack gets corrupted or a floating point
       exception occurs.
 #2175: ubjson: valgind registers "Invalid write of size 4" in unittests
 #4590: pkg: building relic with clang fails.
 #5796: native: tlsf: early malloc will lead to a crash: TLSF needs pools to be
       initialized (which is currently expected to be done in an application).
       If a malloc is needed before an application's main started (e.g. driver
       initialization) the node can crash, since no pool is allocated yet.

other platform related issues
-----------------------------
 #1891: newlib-nano: Printf formatting does not work properly for some numberic
       types: PRI[uxdi]64, PRI[uxdi]8 and float are not parsed in newlib-nano
 #2006: cpu/nrf51822: timer callback may be fired too early
 #2143: unittests: tests-core doesn't compile for all platforms: GCC build-ins
       were used in the unittests which are not available with msp430-gcc
 #2300: qemu unittest fails because of a page fault
 #4512: pkg: tests: RELIC unittests fail on iotlab-m3
 #4522: avsextrem: linker sometimes doesn't find `bl_init_clks()`
 #4560: make: clang is more pedantic than gcc oonf_api is not building with
       clang. (Partly solved by #4593)
 #4694: drivers/lm75a: does not build
 #4737: cortex-m: Hard fault after a thread exits (under some circumstances)
 #4822: kw2xrf: packet loss when packets get fragmented
 #4876: at86rf2xx: Simultaneous use of different transceiver types is not
       supported
 #4954: chronos: compiling with -O0 breaks
 #4866: not all GPIO driver implementations are thread safe: Due to non-atomic
       operations in the drivers some pin configurations might get lost.
 #5009: RIOT is saw-toothing in energy consumption (even when idling)
 #5103: xtimer: weird behavior of tests/xtimer_drift: xtimer_drift randomly
       jumps a few seconds on nrf52
 #5361: cpu/cc26x0: timer broken
 #5405: Eratic timings on iotlab-m3 with compression context activated
 #5460: cpu/samd21: i2c timing with compiler optimization
 #5486: at86rf2xx: lost interrupts
 #5489: cpu/lpc11u34: ADC broken
 #5603: atmega boards second UART issue
 #5678: at86rf2xx: failed assertion in _isr
 #5719: cc2538: rf driver doesn't handle large packets
 #5799: kw2x: 15.4 duplicate transmits
 #5944: msp430: ipv6_hdr unittests fail
 #5848: arduino: Race condition in sys/arduino/Makefile.include
 #5954: nRF52 uart_write get stuck
 #6018: nRF52 gnrc 6lowpan ble memory leak

other issues
------------
 #1263: TLSF implementation contains (a) read-before-write error(s).
 #3256: make: Setting constants on compile time doesn't really set them
       everywhere
 #3366: periph/i2c: handle NACK
 #4488: Making the newlib thread-safe: When calling puts/printf after
       thread_create(), the CPU hangs for DMA enabled uart drivers.
 #4866: periph: GPIO drivers are not thread safe
 #5128: make: buildtest breaks when exporting FEATURES_PROVIDED var
 #5207: make: buildest fails with board dependent application Makefiles
 #5390: pkg: OpenWSN does not compile: This package still uses deprecated
       modules and was not tested for a long time.
 #5520: tests/periph_uart not working
 #5561: C++11 extensions in header files
 #5776: make: Predefining CFLAGS are parsed weirdly
 #5863: OSX +  SAMR21-xpro: shell cannot handle command inputs larger than 64
       chars
 #5962: Makefile: UNDEF variable is not working as documented
 #6022: pkg: build order issue

Special Thanks
==============
We like to give our special thanks to all the companies that provided us with
their hardware for porting and testing, namely the people from (in
alphabeticalorder): Atmel, Freescale, Imagination Technologies, Limifrog,
Nordic, OpenMote, Phytec, SiLabs, UDOO,and Zolertia; and also companies that
directly sponsored development time: Cisco Systems, Eistec, Ell-i, Enigeering
Spirit, Nordic, FreshTemp LLC, OTAkeys and Phytec.

More information
================
http://www.riot-os.org

Mailing lists
-------------
* RIOT OS kernel developers list
  devel@riot-os.org (http://lists.riot-os.org/mailman/listinfo/devel)
* RIOT OS users list
  users@riot-os.org (http://lists.riot-os.org/mailman/listinfo/users)
* RIOT commits
  commits@riot-os.org (http://lists.riot-os.org/mailman/listinfo/commits)
* Github notifications
  notifications@riot-os.org (http://lists.riot-os.org/mailman/listinfo/notifications)

IRC
---
* Join the RIOT IRC channel at: irc.freenode.net, #riot-os

License
=======
* Most of the code developed by the RIOT community is licensed under the GNU
  Lesser General Public License (LGPL) version 2.1 as published by the Free
  Software Foundation.
* Some external sources are published under a separate, LGPL compatible
  license (e.g. some files developed by SICS).

All code files contain licensing information.
@miri64 miri64 modified the milestones: Release 2016.10, Release 2017.01 Nov 11, 2016
@mlohse
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mlohse commented Nov 23, 2016

Hi, I ran into this issue and spent an entire day tracing it down to a semaphore used by lwip:
In 'sema_wait_timed_msg' a 'timer_t' is created as a local variable, the timer is set, but before it expires or is removed the function's scope can be left and the xtimer_t removed from the stack:

int sema_wait_timed_msg(sema_t *sema, uint64_t timeout, msg_t *msg)
{
    unsigned old_state;
    msg_t timeout_msg;
    xtimer_t timeout_timer;

    if (sema == NULL) {
        return -EINVAL;
    }
    if (timeout != 0) {
        old_state = irq_disable();
        timeout_timer.target = 0, timeout_timer.long_target = 0;
        timeout_msg.type = MSG_TIMEOUT;
        timeout_msg.content.ptr = sema;
        /* we will stay in the same stack context so we can use timeout_msg */
        xtimer_set_msg64(&timeout_timer, timeout, &timeout_msg, sched_active_pid);
        irq_restore(old_state);
    }
    while (1) {
        priority_queue_node_t n;
        unsigned value;

        old_state = irq_disable();
        value = sema->value;
        if (value != 0) {
            sema->value = value - 1;
            irq_restore(old_state);
            return 0; <-- timeout_timer is removed from stack, but still in the list!
        }
        ...
    }
}

This is bad already an can lead to a crash, but it get's better:
When 'sema_wait_timed_msg' is called again, chances seem to be surprisingly high, that the new xtimer_t is located at the exact same location. The timers .target and .long_target are reset to '0'.
So when the timer is set although already in the list, it survives the superficial check in '_is_set'...

static inline int _is_set(xtimer_t *timer)
{
    return (timer->target || timer->long_target);
}

...hence the timer is not removed before it gets added again. When 'xtimer_set' returns the list is left in a broken state with timer_list_head->next pointing to itself (instead of '0').
So the next function trying to iterate over the list (e.g. when the timer interrupt is fired or when another timer is added) ends up in an endless-loop and RiotOS hangs :(

@kaspar030
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Wow, nice catch and thanks a lot for digging this deep!

@miri64 Do you want to fix this (... having the sema rewrite (#6155) in mind)?

@miri64
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miri64 commented Nov 23, 2016

As #6155 (comment) points out, that function is removed in that fix. But as far as I understood this there is also a bug in xtimer, not checking the identity of an added xtimer_t struct. This should be an easy fix to xtimer, doesn't it?

@mlohse
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mlohse commented Nov 23, 2016

@miri64 As long as xtimer is used correctly it works as expected.
I forgot to mention, that removing the timer before returning from 'sema_wait_timed_msg' fixed this issue for me:

int sema_wait_timed_msg(sema_t *sema, uint64_t timeout, msg_t *msg)
{
    ...
    while (1) {
        priority_queue_node_t n;
        unsigned value;
        old_state = irq_disable();

        value = sema->value;
        if (value != 0) {
            sema->value = value - 1;
            irq_restore(old_state);
            if (timeout != 0) {
                xtimer_remove(&timeout_timer);
            }
            return 0;
        }
        ...
    }
}

Considering the impact (RiotOS hanging) of a wrongly used timer and how difficult it is to trace such bugs back, one could argue that a more careful check should be done. A safer implementation involves iterating at least over the list where the timer would be added to, which costs some additional time... in a critical section, while interrupts are disabled...

@miri64
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miri64 commented Nov 23, 2016

@kaspar030 Mhhhh... What is xtimer internally: A circular list or a linear list? If it is the latter you can check if the xtimer is part of (any) list by checking the next value. If it is NULL it obviously is part of a list (most likely the timer queue), if not it is either not already scheduled or at the very end of a queue (which means you need to traverse the queue anyways to add it).

@lebrush
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lebrush commented Nov 23, 2016

I think it's not that simple. This would only be true if the xtimer variable is in the same place of the stack. But if in the next iteration is placed in another position, the previous xtimer in the list now points to unpredictable data (corrupt data). And you will not catch that they are actually the same timer. Hence, as @mlohse pointed out, one has to be careful to use the xtimer correctly...

EDIT: sorry, brainfart. We are talking about two separate things. One is the "overwritten" timer which @mlohse was mentioning. The other is a orphan xtimer which would cause unexpected behaviour. For the second one can only make sure a correct timer use. For the first a pointer check shall suffice.

@OlegHahm
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OlegHahm commented Dec 8, 2016

So, who has the token on this?

@lebrush
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lebrush commented Dec 13, 2016

@OlegHahm this should be "solved" when #6158 and #6155 are merged

@miri64
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miri64 commented Dec 13, 2016

@lebrush seems unrelated to the OP... (just the one reported by @mlohse) or am I mistaking?

neiljay pushed a commit to neiljay/RIOT that referenced this issue Jan 16, 2017
RIOT-2016.10 - Release Notes
============================
RIOT is a real-time multi-threading operating system that supports a range of
devices that are typically found in the Internet of Things: 8-bit
microcontrollers, 16-bit microcontrollers and light-weight 32-bit processors.

RIOT is based on the following design principles: energy-efficiency, real-time
capabilities, small memory footprint, modularity, and uniform API access,
independent of the underlying hardware (this API offers partial POSIX
compliance).

RIOT is developed by an international open source community which is
independent of specific vendors (e.g. similarly to the Linux community) and is
licensed with a non-viral copyleft license (LGPLv2.1), which allows indirect
business models around the free open-source software platform provided by
RIOT.

About this release:
===================
This release provides a lot of new features as well as it  fixes several major
bugs. Among these new features are the new simplified network socket API
called sock, the GNRC specific CoAP implementation gcoap and several new
packages: TinyDTLS, the Aversive++ microcontroller library for robotics, the
u8g2 graphic library, and nanocoap.
Using the new sock API an implementation of the Simple Time Network Protocol
(SNTP) was also introduced, allowing for time synchronization between nodes.
New platforms include the Arduino Uno, the Arduino Duemilanove, the Arduino
Zero, SODAQ Autonomo, and the Zolertia remote (rev. B).
The most significant bug fix was done in native which led to a significantly
more robust handling of ISRs and now allows for at least 1,000 native
instances running stably on one machine.

About 263 pull requests with about 398 commits have been merged since the last
release and about 42 issues have been solved. 37 people contributed with code
in 100 days. 1006 files have been touched with 166500 insertions and 26926
deletions.

Notations used below:
=====================
+ means new feature/item
* means modified feature/item
- means removed feature/item

New features and changes
========================
General
-------
* Verbose behavior for assert() macro

Core
----
+ MPU support for Cortex-M

API changes
-----------
+ Socket-like sock API (replacing conn)
* netdev2: Add Testmodes and CCA modes
* IEEE 802.15.4: clean-up Intra-PAN behavior
* IEEE 802.15.4: centralize default values
* gnrc_pktbuf: allow for 0-sized snips
+ gnrc_netapi: mbox and arbitrary callback support

System libraries
----------------
No new features or changes

Networking
----------
+ Provide sock-port for GNRC
+ gcoap: a GNRC-based CoAP implementation
+ Simple Network Time Protocol (RFC 5905, section 14)
+ Priority Queue for packet snips
+ IPv4 header definitions

Packages
--------
+ nanocoap: CoAP header parser/builder
+ TinyDTLS: DTLS library
+ tiny-asn1: asn.1/der decoder
+ Aversive++ microcontroller programming library
+ u8g2 graphic library

Platforms
---------
+ Support for stm32f2xx MCU family
+ Low power modes for samd21 CPUs
+ More Arduino-based platforms:
    + Arduino Uno
    + Arduino Duemilanove
    + Arduino Zero
+ More boards of ST's Nucleo platforms:
    + ST Nucleo F030 board support
    + ST Nucleo F070 board support
    + ST Nucleo F446 board support
+ SODAQ Automono
+ Zolertia remote rev. B

Drivers
-------
+ W5100 Ethernet device
+ Atmel IO1 Xplained extension
+ LPD8808 LED strips
* at86rf2xx: provide capability to access the RND_VALUE random value register

Build System
------------
+ static-tests build target for easy local execution of CI's static tests

Other
-----
+ Provide Arduino API to Nucleo boards
+ Packer configuration file to build vagrant boxes
+ CC2650STK Debugger Support
+ ethos: add Ethos over TCP support

Fixed Issues from the last release
==================================
 RIOT-OS#534:  native debugging on osx fails
 RIOT-OS#2071: native: *long* overdue fixes
 RIOT-OS#3341: netdev2_tap crashes when hammered
 RIOT-OS#5007: gnrc icmpv6: Ping reply goes out the wrong interface
 RIOT-OS#5432: native: valgrind fails

Known Issues
============
Networking related issues
-------------------------
 RIOT-OS#3075: nhdp: unnecessary microsecond precision: NHDP works with timer values
       of microsecond precision which is not required. Changing to lower
       precision would save some memory.
 RIOT-OS#4048: potential racey memory leak: According to the packet buffer stats,
       flood-pinging a multicast destination may lead to a memory leak due to
       a race condition. However, it seems to be a rare case and a completely
       filled up packet buffer was not observed.
 RIOT-OS#4388: POSIX sockets: open socket is bound to a specific thread: This was an
       inherit problem of the conn API under GNRC. Since the POSIX sockets are
       still based on conn for this release, this issue persists
 RIOT-OS#4527: gnrc_ipv6: Multicast is not forwarded if routing node listens to the
       address (might still be fixable for release, see RIOT-OS#5729, RIOT-OS#5230: gnrc
       ipv6: multicast packets are not dispatched to the upper layers)
 RIOT-OS#5016: gnrc_rpl: Rejoining RPL instance as root after reboot messes up routing
 RIOT-OS#5055: cpuid: multiple radios will get same EUI-64 Nodes with multiple
       interfaces might get the same EUI-64 for them since they are generated
       from the same CPU ID.
 RIOT-OS#5656: Possible Weakness with locking in the GNRC network stack: For some
       operations mutexes to the network interfaces need to get unlocked in
       the current implementation to not get deadlocked. Recursive mutexes as
       provided in RIOT-OS#5731 might help to solve this problem.
 RIOT-OS#5748: gnrc: nodes crashing with too small packet buffer: A packet buffer of
       size ~512 B might lead to crashes. The issue describes this for several
       hundret nodes, but agressive flooding with just two nodes was also
       shown to lead to this problem.
 RIOT-OS#5858: gnrc: 6lo: potential problem with reassembly of fragments: If one frame
       gets lost the reassembly state machine might get out of sync

 ### NDP is not working properly
 RIOT-OS#4499: handle of l2src_len in gnrc_ndp_rtr_sol_handle: Reception of a router
       solicitation might lead to invalid zero-length link-layer addresses in
       neighbor cache.
 RIOT-OS#5005: ndp: router advertisement sent with global address: Under some
       circumstances a router might send RAs with GUAs. While they are ignored
       on receive (as RFC 4861 specifies), RAs should have link-local
       addresses and not even be send out this way.
 RIOT-OS#5122: NDP: global unicast address on non-6LBR nodes disappears after a while:
       Several issues (also see RIOT-OS#5760) lead to a global unicast address
       effectively being banned from the network (disappears from neighbor
       cache, is not added again)
 RIOT-OS#5467: ipv6 address vanishes when ARO (wrongly) indicates DUP caused by
       outdated ncache at router
 RIOT-OS#5539: Border Router: packet not forwarded from ethos to interface 6
 RIOT-OS#5790: ND: Lost of Global IPV6 on node after sending lot of UDP frame from BR

Timer related issues
--------------------
 RIOT-OS#4841: xtimer: timer already in the list: Under some conditions an xtimer can
       end up twice in the internal list of the xtimer module
 RIOT-OS#4902: xtimer: xtimer_set: xtimer_set does not handle integer overflows well
 RIOT-OS#5338: xtimer: xtimer_now() not ISR safe for non-32-bit platforms.
 RIOT-OS#5928: xtimer: usage in board_init() crashes: some boards use the xtimer in
       there board_init() function. The xtimer is however first initialized in
       the auto_init module which is executed after board_init()
 RIOT-OS#6052: tests: xtimer_drift gets stuck: xtimer_drift application freezes after
       ~30-200 seconds

native related issues
---------------------
 RIOT-OS#495:  native not float safe: When the FPU is used when an asynchronous context
       switch occurs, either the stack gets corrupted or a floating point
       exception occurs.
 RIOT-OS#2175: ubjson: valgind registers "Invalid write of size 4" in unittests
 RIOT-OS#4590: pkg: building relic with clang fails.
 RIOT-OS#5796: native: tlsf: early malloc will lead to a crash: TLSF needs pools to be
       initialized (which is currently expected to be done in an application).
       If a malloc is needed before an application's main started (e.g. driver
       initialization) the node can crash, since no pool is allocated yet.

other platform related issues
-----------------------------
 RIOT-OS#1891: newlib-nano: Printf formatting does not work properly for some numberic
       types: PRI[uxdi]64, PRI[uxdi]8 and float are not parsed in newlib-nano
 RIOT-OS#2006: cpu/nrf51822: timer callback may be fired too early
 RIOT-OS#2143: unittests: tests-core doesn't compile for all platforms: GCC build-ins
       were used in the unittests which are not available with msp430-gcc
 RIOT-OS#2300: qemu unittest fails because of a page fault
 RIOT-OS#4512: pkg: tests: RELIC unittests fail on iotlab-m3
 RIOT-OS#4522: avsextrem: linker sometimes doesn't find `bl_init_clks()`
 RIOT-OS#4560: make: clang is more pedantic than gcc oonf_api is not building with
       clang. (Partly solved by RIOT-OS#4593)
 RIOT-OS#4694: drivers/lm75a: does not build
 RIOT-OS#4737: cortex-m: Hard fault after a thread exits (under some circumstances)
 RIOT-OS#4822: kw2xrf: packet loss when packets get fragmented
 RIOT-OS#4876: at86rf2xx: Simultaneous use of different transceiver types is not
       supported
 RIOT-OS#4954: chronos: compiling with -O0 breaks
 RIOT-OS#4866: not all GPIO driver implementations are thread safe: Due to non-atomic
       operations in the drivers some pin configurations might get lost.
 RIOT-OS#5009: RIOT is saw-toothing in energy consumption (even when idling)
 RIOT-OS#5103: xtimer: weird behavior of tests/xtimer_drift: xtimer_drift randomly
       jumps a few seconds on nrf52
 RIOT-OS#5361: cpu/cc26x0: timer broken
 RIOT-OS#5405: Eratic timings on iotlab-m3 with compression context activated
 RIOT-OS#5460: cpu/samd21: i2c timing with compiler optimization
 RIOT-OS#5486: at86rf2xx: lost interrupts
 RIOT-OS#5489: cpu/lpc11u34: ADC broken
 RIOT-OS#5603: atmega boards second UART issue
 RIOT-OS#5678: at86rf2xx: failed assertion in _isr
 RIOT-OS#5719: cc2538: rf driver doesn't handle large packets
 RIOT-OS#5799: kw2x: 15.4 duplicate transmits
 RIOT-OS#5944: msp430: ipv6_hdr unittests fail
 RIOT-OS#5848: arduino: Race condition in sys/arduino/Makefile.include
 RIOT-OS#5954: nRF52 uart_write get stuck
 RIOT-OS#6018: nRF52 gnrc 6lowpan ble memory leak

other issues
------------
 RIOT-OS#1263: TLSF implementation contains (a) read-before-write error(s).
 RIOT-OS#3256: make: Setting constants on compile time doesn't really set them
       everywhere
 RIOT-OS#3366: periph/i2c: handle NACK
 RIOT-OS#4488: Making the newlib thread-safe: When calling puts/printf after
       thread_create(), the CPU hangs for DMA enabled uart drivers.
 RIOT-OS#4866: periph: GPIO drivers are not thread safe
 RIOT-OS#5128: make: buildtest breaks when exporting FEATURES_PROVIDED var
 RIOT-OS#5207: make: buildest fails with board dependent application Makefiles
 RIOT-OS#5390: pkg: OpenWSN does not compile: This package still uses deprecated
       modules and was not tested for a long time.
 RIOT-OS#5520: tests/periph_uart not working
 RIOT-OS#5561: C++11 extensions in header files
 RIOT-OS#5776: make: Predefining CFLAGS are parsed weirdly
 RIOT-OS#5863: OSX +  SAMR21-xpro: shell cannot handle command inputs larger than 64
       chars
 RIOT-OS#5962: Makefile: UNDEF variable is not working as documented
 RIOT-OS#6022: pkg: build order issue

Special Thanks
==============
We like to give our special thanks to all the companies that provided us with
their hardware for porting and testing, namely the people from (in
alphabeticalorder): Atmel, Freescale, Imagination Technologies, Limifrog,
Nordic, OpenMote, Phytec, SiLabs, UDOO,and Zolertia; and also companies that
directly sponsored development time: Cisco Systems, Eistec, Ell-i, Enigeering
Spirit, Nordic, FreshTemp LLC, OTAkeys and Phytec.

More information
================
http://www.riot-os.org

Mailing lists
-------------
* RIOT OS kernel developers list
  devel@riot-os.org (http://lists.riot-os.org/mailman/listinfo/devel)
* RIOT OS users list
  users@riot-os.org (http://lists.riot-os.org/mailman/listinfo/users)
* RIOT commits
  commits@riot-os.org (http://lists.riot-os.org/mailman/listinfo/commits)
* Github notifications
  notifications@riot-os.org (http://lists.riot-os.org/mailman/listinfo/notifications)

IRC
---
* Join the RIOT IRC channel at: irc.freenode.net, #riot-os

License
=======
* Most of the code developed by the RIOT community is licensed under the GNU
  Lesser General Public License (LGPL) version 2.1 as published by the Free
  Software Foundation.
* Some external sources are published under a separate, LGPL compatible
  license (e.g. some files developed by SICS).

All code files contain licensing information.
@PeterKietzmann PeterKietzmann modified the milestones: Release 2017.01, Release 2017.04 Jan 26, 2017
@DipSwitch
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DipSwitch commented Jun 21, 2017

I had the same problem and in combination with TCP.

It seems that the problem triggers if an other msg is received (from interrupt in my case) while the xtimer_msg_receive_timeout is waiting or has timed out or is restarting... Or the timer triggers while another message is queued. I have no idea lol.

And sorry about the close my touchpad was enabled =(

@miri64
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miri64 commented Oct 25, 2017

@OlegHahm this should be "solved" when #6158 and #6155 are merged

Those PRs were merged a while ago. Ist his issue fixed then?

@immesys
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immesys commented Oct 25, 2017

I have not seen it again, so I think it is ok to close this. We can reopen if it shows up

@miri64
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miri64 commented Oct 25, 2017

Alright

@miri64 miri64 closed this as completed Oct 25, 2017
@miri64 miri64 added this to the Release 2017.10 milestone Oct 25, 2017
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