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Added entry 10.5281/zenodo.4139359 #18

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22 changes: 22 additions & 0 deletions 10.5281_zenodo.4139359/article.bib
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@Article {Davies:2020,
author = {Iain Davies and Stephen Eglen},
title = {{[Re] The principal components of natural images}},
journal = {ReScience C},
year = {2020},
month = {10},
volume = {6},
number = {3},
pages = {{#6}},
doi = {10.5281/zenodo.4139359},
url = {https://zenodo.org/record/4139359/files/article.pdf},
code_url = {https://github.com/IainDaviesMaths/Reproduction-Hancock.git},
code_doi = {10.5281/zenodo.4139727},
code_swh = {},
data_url = {},
data_doi = {},
review_url = {https://github.com/ReScience/submissions/issues/45},
type = {Replication},
language = {Julia},
domain = {Computational Neuroscience},
keywords = {PCA, principal component analysis, MATLAB, V1, natural images, visual cortex}
}
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121 changes: 121 additions & 0 deletions 10.5281_zenodo.4139359/article.yaml
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# To be filled by the author(s) at the time of submission
# -------------------------------------------------------

# Title of the article:
# - For a successful replication, it should be prefixed with "[Re]"
# - For a failed replication, it should be prefixed with "[¬Re]"
# - For other article types, no instruction (but please, not too long)
title: "[Re] The principal components of natural images"

# List of authors with name, orcid number, email and affiliation
# Affiliation "*" means contact author (required even for single-authored papers)
authors:
- name: Iain Davies
orcid: 0000-0002-5361-6285
email: id318@cam.c.uk
affiliations: 1,*

- name: Stephen Eglen
orcid: 0000-0001-8607-8025
email: sje30@cam.ac.uk
affiliations: 1

# List of affiliations with code (corresponding to author affiliations), name
# and address. You can also use these affiliations to add text such as "Equal
# contributions" as name (with no address).
affiliations:
- code: 1
name: Department of Applied Mathematics and Theoretical Physics, Cambridge University
address: Cambridge, UK

# List of keywords (adding the programming language might be a good idea)
keywords: PCA, principal component analysis, MATLAB, V1, natural images, visual cortex

# Code URL and DOI/SWH (url is mandatory for replication, doi after acceptance)
# You can get a DOI for your code from Zenodo, or an SWH identifier from
# Software Heritage.
# see https://guides.github.com/activities/citable-code/
code:
- url: https://github.com/IainDaviesMaths/Reproduction-Hancock.git
- doi: 10.5281/zenodo.4139727
- swh:

# Data URL and DOI (optional if no data)
data:
- url:
- doi:

# Information about the original article that has been replicated
replication:
- cite: Hancock, P. et al, 1991 The Principal Components of Natural Images
- bib: # Bibtex key (if any) in your bibliography file
- url: http://citeseerx.ist.psu.edu/viewdoc/download;jsessionid=044DFF560FC2E801B579C2F23D268B44?doi=10.1.1.41.192&rep=rep1&type=pdf
- doi: 10.1088/0954-898X/3/1/008

# Don't forget to surround abstract with double quotes
abstract: "The visual cortex has long been the subject of study for computational
neuroscientists. Various neural network techniques have been applied
in attempts to recreate the receptive fields found experimentally in
visual cortex cells. In 1991 Hancock et al used an algorithm designed
by Sanger in 1989 to perform Principal Component Analysis on a series
of natural greyscale images, which replicated some features of
receptive fields found in the V1 of cats, although they noted that
many of the complex principal components were not found. Moreover,
they showed that Sanger's algorithm was able to find distinguishing
features in text images as well as natural images, an important find in
the study of neural networks."

# Bibliography file (yours)
bibliography: bibliography.bib

# Type of the article
# Type can be:
# * Editorial
# * Letter
# * Replication
type: Replication

# Scientific domain of the article (e.g. Computational Neuroscience)
# (one domain only & try to be not overly specific)
domain: Computational Neuroscience

# Coding language (main one only if several)
language: Julia


# To be filled by the author(s) after acceptance
# -----------------------------------------------------------------------------

# For example, the URL of the GitHub issue where review actually occured
review:
- url: https://github.com/ReScience/submissions/issues/45

contributors:
- name: Tiziano Zito
orcid: 0000-0002-7199-7456
role: editor
- name: Pietro Berkes
orcid:
role: reviewer
- name: Christian Jarvers
orcid: 0000-0003-0062-9776
role: reviewer

# This information will be provided by the editor
dates:
- received: July 17, 2020
- accepted: October 27, 2020
- published: October 28, 2020

# This information will be provided by the editor
article:
- number: 6
- doi: 10.5281/zenodo.4139359
- url: https://zenodo.org/record/4139359/files/article.pdf

# This information will be provided by the editor
journal:
- name: "ReScience C"
- issn: 2430-3658
- volume: 6
- issue: 3