for protocols and educational material
├── image-analysis-basics
│ ├── 1__viewing-stacks.ipynb
│ ├── 2__finding-local-maxima.ipynb
│ ├── 3__fitting-gaussians.ipynb
│ ├── 4__Image-alignment-with-toolbox.ipynb
│ ├── 5__DNA_curtain_finder_1.ipynb
│ ├── 6__DNA_curtain_finder_2.ipynb
│ ├── 7__DNA_curtain_finder_3.ipynb
│ └── test_images
├── non-image-analysis
│ ├── Analysis\ of\ off\ rates.ipynb
│ ├── DNA_mapping_extras
│ ├── Mapping\ DNA\ features.ipynb
└── protocols
├── 181025_LB_HistonePurificationProtocol-annotated.docx
├── 181226_LB_12mer194ArrayDNAPrep.docx
├── 181226_LB_ChromatinAssembliesOnLambda.docx
├── 181226_LB_ChromatinPhasing.docx
├── 181226_LB_MNaseChromatinDigestion.docx
├── 181226_LB_MonoNucleosomeAssembly.docx
├── 181226_dCas9endLabeling.docx
├── GLOXY\ Preparation.md
├── Histone\ Maleimide\ Labeling.md
├── Histone\ Purification\ Protocol.txt
├── Histone_octamer_refolding.md
├── Lambda\ DNA\ Separation\ from\ handles\ and\ small\ fragments.md
├── Peg_silane.md
├── Preparing\ Lipids.md
├── Protocol\ H3\ one\ pot\ ligation.docx
├── Purifying\ lambda\ DNA\ from\ liquid\ lytic\ growth\ PEG.md
├── README.md
├── Senp1\ Purification\ Protocol\ v1.2.docx
├── flowcell\ protocol.md
└── truncH3protocol-fujimori.docx