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@Roth-Lab

Roth Lab

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  1. pyclone pyclone Public

    Probabilistic model for inferring clonal population structure from deep NGS sequencing.

    Python 99 36

  2. pyclone-vi pyclone-vi Public

    Fast method for inferring cancer clonal population structure from SNV data.

    Python 50 10

  3. pgsm pgsm Public

    Python 12 1

  4. contra_workshop contra_workshop Public

    Notes from the CONTRA cancer evolution workshop

    Tcl 7 1

  5. SpatialSort SpatialSort Public

    A spatially aware Bayesian clustering approach that allows for the incorporation of prior biological knowledge.

    Python 4 1

  6. pydp pydp Public

    Python 3 5

Repositories

Showing 10 of 17 repositories
  • phyclone Public

    Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.

    Roth-Lab/phyclone’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Nov 3, 2024
  • pyclone-vi Public

    Fast method for inferring cancer clonal population structure from SNV data.

    Roth-Lab/pyclone-vi’s past year of commit activity
    Python 50 GPL-3.0 10 24 0 Updated Jul 2, 2024
  • ESQmodel Public

    A biologically informed evaluation of 2-D cell segmentation quality in multiplexed tissue images.

    Roth-Lab/ESQmodel’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Jul 6, 2023
  • single_cell_FL Public
    Roth-Lab/single_cell_FL’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 16, 2023
  • scg Public

    Software for inference of clonal genotypes using targeted single cell (nucleus) sequencing.

    Roth-Lab/scg’s past year of commit activity
    Python 1 GPL-3.0 2 1 0 Updated Jun 15, 2022
  • humi_pipeline Public

    Pipeline for running Hierachical UMI model

    Roth-Lab/humi_pipeline’s past year of commit activity
    Python 1 0 0 0 Updated May 30, 2022
  • SpatialSort Public

    A spatially aware Bayesian clustering approach that allows for the incorporation of prior biological knowledge.

    Roth-Lab/SpatialSort’s past year of commit activity
    Python 4 MIT 1 2 0 Updated May 24, 2022
  • Roth-Lab.github.io Public
    Roth-Lab/Roth-Lab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 14, 2021
  • pgfa_experiments Public

    Experiments for Particle Gibbs Feature Allocation paper

    Roth-Lab/pgfa_experiments’s past year of commit activity
    Python 0 0 0 0 Updated Jun 25, 2021
  • pgfa Public

    Particle Gibbs Feature Allocation

    Roth-Lab/pgfa’s past year of commit activity
    Python 1 0 0 0 Updated Jun 8, 2021
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