fragment size

[ecroot]

Hi,
Please can you explain why the fragment size in the epic2 commands in map_peakscalling.sh is 300? I was expecting it to be 150.
Thanks
-Emmon

[Ruitulyu]

Hi Emmon, I think the fragment size should be an estimated number, which should not make a big difference for the peak calling. You can also change the fragment size from 300bp to 150bp and check the difference. Best. Ruitu

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On Wed, Jan 10, 2024 at 8:45 AM E Croot ***@***.***> wrote: Hi, Please can you explain why the fragment size in the epic2 commands in map_peakscalling.sh is 300? I was expecting it to be 150. Thanks -Emmon — Reply to this email directly, view it on GitHub <#21>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/APDPVGHPBLCVGSQPAQO2IGLYN2SR7AVCNFSM6AAAAABBU5HJVSVHI2DSMVQWIX3LMV43ERDJONRXK43TNFXW4OZWGA2TKNZVG4> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

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[ecroot]

Thanks