Skip to content

Issues: SATAY-LL/SATAY-DOWNSTREAM-ANALYSIS

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

13 Open 1 Closed
13 Open 1 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Prepare Data
#20 opened Oct 22, 2024 by leilaicruz
use neutral genes + distribution to find deviation of high/lowfitness genes
#17 opened Sep 29, 2021 by FloorDolsma
Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms
#16 opened Jul 13, 2021 by leilaicruz
2
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
#15 opened Jul 13, 2021 by leilaicruz
1
Calculate chance of getting few transposons due to stochasticity 0-few transposons
#12 opened Jun 18, 2021 by FloorDolsma
Determine upper bound of fitness score for genes without transposons 0-few transposons
#11 opened Jun 18, 2021 by FloorDolsma
Normalize using regional transposon densities Difference Tn density different regions on the genome have different transposon densities
#10 opened Jun 18, 2021 by FloorDolsma
Compensate for centromere bias Difference Tn density different regions on the genome have different transposon densities
#9 opened Jun 18, 2021 by FloorDolsma
Average over datasets of multiple (biological or technical) replicates Statistical noise
#8 opened Jun 18, 2021 by FloorDolsma
Determine onfidence interval for sampling help wanted Extra attention is needed Statistical noise
#7 opened Jun 18, 2021 by FloorDolsma
1 of 2 tasks
1
Outlier analysis Outliers Transposons with significantly high #reads, probably bacause they did not cause a KO
#6 opened Jun 18, 2021 by FloorDolsma
Reference SATAY experiment to find the insertion locations with bias bias_PCR experiment
#5 opened Jun 18, 2021 by FloorDolsma
Take middle 80% of gene with transposons bias_PCR
#4 opened Jun 18, 2021 by leilaicruz
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.