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Initial version of lcms ETL #1

Merged
merged 1 commit into from
Sep 12, 2017
Merged

Initial version of lcms ETL #1

merged 1 commit into from
Sep 12, 2017

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mwes
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@mwes mwes commented Sep 12, 2017

Contains an initial version of an lcms ETL processor

Should be pretty straightforward - build.sh to build and run.sh to test a run.

Currently parameterized with an external .fasta file for the test run - @mwvaughn I don't want to store this in git (1.8MB) - any suggestions from the TACC perspective on where to put this (S3 bucket? Somewhere else?)

Currently outputs the shape the Dataframe created - intended for downstream consumers

Volume mapping and parameter passing are initial - more work to be done here.

@meslami-netrias contributed to this as well.

@mwvaughn mwvaughn merged commit a86469c into master Sep 12, 2017
@mwes mwes deleted the lcms_etl branch September 12, 2017 00:51
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mwes commented Sep 12, 2017

Test .fasta file: s3://sd2e-q0-ta3-example-data/uploads/lcms/ec_K12.fasta

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2 participants