New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

How to find down markers? How to distinguish between up and down genes? #271

Open

Ma-hz opened this issue May 6, 2024 · 0 comments

Ma-hz commented May 6, 2024

I used this code to find marker genes, but 'logfc' value I got were all positive and no negative values.

data.tl.find_marker_genes(cluster_res_key='spatial_leiden',
    method="wilcoxon_test",
    use_highly_genes=False,
    use_raw=True
)

The text was updated successfully, but these errors were encountered:

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment