[GEN-1330] Setup staging pipeline #19
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thomasyu888
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Jun 3, 2024
thomasyu888
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Jul 18, 2024
BryanFauble
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Aug 12, 2024
BryanFauble
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BryanFauble
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Purpose: This is a draft PR. This is meant to allow us to be able to run staging on just the consortium release and public release steps. Previously these steps were included along with main and mutation processing but we don't want to do that because it will take over a day to run main / mutation processing on production data.
Testing:
process_mainrun and it ran on staging project as expected and updated staging database tablesconsortium_release_step_onlyand it ran mostly on the staging project but ran into a hurdle with running maf in bed and mutation in cis which created the need for this PR