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2.5.0 to staging #1027

Merged
merged 159 commits into from
May 10, 2022
Merged

2.5.0 to staging #1027

merged 159 commits into from
May 10, 2022

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JessterB
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mcourville and others added 30 commits January 27, 2022 08:45
@mcourville
Updated to angular 10.2 + dependencies
b079122
@mcourville
Fixed build
38e6de7
@mcourville
Updated packages
454d93e
@mcourville
Updated packages
d77cf8f
@mcourville
Updated to Angular 11.2
bad1dec
@mcourville
Fixed errors and styles
ff887fe
@mcourville
Support new brain regions
880c666
@mcourville
Removed debug logs
063f67f
@mcourville
Precalculated distribution data
87c0ecc
@mcourville
Added new route for evidence data and updated RNA plots
42836d7
@mcourville
Fixed tests
b377916
@mcourville
Mongo Index Testing
ed890da
@mcourville
Gene comparison tool beta
78d9823
@mcourville
Gene comparison tool beta
1dd74a1
@mcourville
Merged Angular 11 PR
de59dc2
@mcourville
Bug fixes and cleanup
bc201f8
@mcourville
Fixed refresh/update issues on consistency of change plot
e7a1f80
@mcourville
Fixed refresh/update issues on consistency of change plot
52f70a4
@mcourville
NPE when no gene network records
539db55
@mcourville
Removed regions with negative/no data on median expression plot
c1ca281
@mcourville
Removed regions with negative/no data on median expression plot
a315a02
@JessterB
Merge pull request #982 from mattcgenui/AG-420/median-expression-plot…
de557a9 
…-should-omit-regions-with-no-data

AG-420 - Removed regions with negative/no data on median expression plot
@mcourville
Made name column required on tables
7848b09
@mcourville
Color and layout changes on gene network plot
0f82bc6
@mcourville
Overall expression data + bug fixes
9506789
@mcourville
Merge remote-tracking branch 'origin/develop' into AG-317/support-new…
77fd2a5 
…-brain-regions
@mcourville
Supertable small fixes
a1bc582
@mcourville
Fixed bottom label
1b0555f
@mcourville
Fixed current gene reload on gene network plot
be59224
@mcourville
Fixed lint errors and added pre-commit
5aa1e44
JessterB and others added 28 commits April 18, 2022 13:48
@JessterB
Merge pull request #1018 from JessterB/AG-328
4200f09 
Editorial adjustment to median expression plot intro text
@JessterB
Merge branch 'develop' into gene-comparison-tool-final-tweaks-and-test
630879f
@JessterB
Merge pull request #1016 from mattcgenui/gene-comparison-tool-final-t…
5e80dc1 
…weaks-and-test

Gene comparison tool final tweaks and test
@JessterB
AG-509: Return empty instead of error payload when no proteomics data
a4b77c2
@JessterB
AG-520: Display Data unavailable only once when no gene network
880885f
@JessterB
AG-520: Data unavailable regions are consistently displayed
4ad6594
@JessterB
AG-519: Filter out negative median expression data before deciding wh…
69d4336 
…ether to render the plot
@JessterB
Clean up
d257ff9
@JessterB
Move span inside div & adjust CSS
0e70303
@JessterB
Put back accidentally removed whitespace
f78779b
@JessterB
Simlar genes text displays with full width
c9b0dc3
@JessterB
Use scss variable for all no-data heights
679ee0c
@JessterB
Merge pull request #1019 from JessterB/AG-515
42637c3 
AG-515: Gene search error messages wrap and do not highlight
@JessterB
Handle both negative AND missing median expression values in geneService
14553b2
@JessterB
Merge pull request #1020 from JessterB/AG-509/AG-519/AG-520
3b890f1 
AG-509/AG-519/AG-520   Misc fixes to RNA and proteomic evidence tabs
@JessterB
Update RNA Data and Methods for this study modal content
11c13fb
@JessterB
RNA/proteomics box plot tooltips pull identifiers from geneInfo
ac58491
@JessterB
Fix typo
3166704
@JessterB
Merge pull request #1021 from JessterB/AG-315
ab05be4 
AG-315: Update RNA Data and Methods for this study modal content
@JessterB
Merge pull request #1022 from JessterB/AG-524
1733b75 
RNA/proteomics box plot tooltips pull identifiers from geneInfo
@JessterB
Update manifest and application version for 2.5.0
ad83c63
@JessterB
Merge pull request #1023 from JessterB/AG-356
20c6766 
Update manifest and application version for 2.5.0
@JessterB
Use geneInfo as source of truth for hgnc
5f0187a
@JessterB
Merge pull request #1024 from JessterB/AG-473
057b0f8 
AG-473: Use geneInfo as source of truth for hgnc
@JessterB
Filter regions with negative MEs
d16df94
@JessterB
Merge pull request #1025 from JessterB/AG-519
bf53985 
Filter regions with negative MEs
@JessterB
Handle missing hgnc_symbol
c21a622
@JessterB
Merge pull request #1026 from JessterB/AG-549
a47e607 
Handle missing hgnc_symbol
@coveralls
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Pull Request Test Coverage Report for Build 1414

  • 515 of 896 (57.48%) changed or added relevant lines in 36 files are covered.
  • 18 unchanged lines in 9 files lost coverage.
  • Overall coverage decreased (-2.07%) to 59.549%
Changes Missing Coverage Covered Lines Changed/Added Lines %
src/app/charts/median-chart/median-chart-view/median-chart-view.component.ts 3 4 75.0%
src/app/genes/gene-comparison-tool/components/gene-comparison-tool-filter-panel/gene-comparison-tool-filter-panel.component.ts 19 20 95.0%
src/app/genes/gene-overview/evidence-menu/proteomics/proteomics.component.ts 1 2 50.0%
src/app/genes/gene-overview/gene-overview.component.ts 4 5 80.0%
src/app/testing/api-service-stub.ts 8 9 88.89%
src/app/charts/select-menu/select-menu-view/select-menu-view.component.ts 2 4 50.0%
src/app/app.component.ts 2 6 33.33%
src/app/core/services/data.service.ts 5 9 55.56%
src/app/charts/box-plot/pbox-plot-view/pbox-plot-view.component.ts 1 6 16.67%
src/app/genes/gene-comparison-tool/components/gene-comparison-tool-details-panel/gene-comparison-tool-details-panel.component.ts 27 34 79.41%
Files with Coverage Reduction New Missed Lines %
src/app/charts/box-plot/pbox-plot-view/pbox-plot-view.component.ts 1 61.14%
src/app/core/services/api.service.ts 1 74.74%
src/app/genes/gene-overview/evidence-menu/rna/gene-network/gene-network.component.ts 1 49.51%
src/app/genes/gene-similar/gene-similar.component.ts 1 48.75%
src/app/testing/data-service-stub.ts 1 96.3%
src/app/testing/gene-service-stub.ts 1 85.82%
src/app/charts/box-plot/box-plot-view/box-plot-view.component.ts 2 62.61%
src/app/charts/select-menu/select-menu-view/select-menu-view.component.ts 3 47.77%
src/app/charts/row-chart/row-chart-view/row-chart-view.component.ts 7 46.34%
Totals Coverage Status
Change from base Build 1278: -2.07%
Covered Lines: 3494
Relevant Lines: 5106
💛 - Coveralls

@JessterB JessterB merged commit 63da27e into staging May 10, 2022
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4 participants
@JessterB @coveralls @mcourville @mattcgenui