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DeepCIN: Attention-based Cervical Histology Image Classification with Sequential Feature Modelling for Pathologist-Level Accuracy

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DeepCIN

Feature based Sequential Classifier with Attention Mechanism

@author: Sudhir Sornapudi @email: ssbw5@mst.edu

Arxiv paper: https://arxiv.org/abs/2007.11392

Step I. Localization

  • Execute 'data_gen' folder codes
    • [MATLAB] Generate vertical segments [Run 'main_getSegmentedImages.m']
    • [Python] Preprocess the vertical images to reshape images to size 64x704
    • Saves images in separate folder

Step II. Segment-level Sequence Generator

  • Run 'main_seg_level_sequence_gen.py'
  • Reads vertical segment images and csv containing ground truths
  • The data is split at image-level for individual folds and the class distribution is maintained (Stratified K-fold)
  • For each fold, saves the logit vector data and trained model weights

Step III. Image-level Classifier

  • Run 'main_attention_based_fusion.py'
  • For each fold, loads the logit vector data and saves trained model weights

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