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  1. lncRNAChromatin lncRNAChromatin Public

    Contains codes for: Integrative modeling of lncRNA-chromatin interaction maps reveals diverse mechanisms of nuclear retention

    R 2

  2. Distinctness Distinctness Public

    https://www.biorxiv.org/content/early/2017/09/18/190157

    R 1

  3. ER_scripts ER_scripts Public

    This repository contains scripts used in analysis of this paper: Integrative analysis of Estrogen Receptor mediated transcriptional program in breast cancer

    R 1 1

  4. rnaseq rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow 1

  5. GEMSTAT GEMSTAT Public

    Forked from UIUCSinhaLab/GEMSTAT

    Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

    C++ 1

  6. ER_Project_CS598 ER_Project_CS598 Public

    Codes for course project CS 598 JP Fall 2018

    R