Inquiry about of Integrated Camellia-seq data joint profiling 4 kinds of data

[Zhklu2003]

Hi Dr. Wang,

I have just read your paper "A mouse model with high clonal barcode diversity for joint lineage,
transcriptomic, and epigenomic profifiling in single cells" and fairly interested in the Camellia-seq data. Is this data offered in this post?
Could you give a guidance to find it? Thanks!

[ShouWenWang]

You can find it here https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE222486

…

-- Shou-Wen Wang, Ph.D. Principal Investigator School of Life Sciences | School of Science Westlake University Shilongshan ST #18, Xihu, Hangzhou, Zhejiang https://www.shouwenwang-lab.com/ From: Zhklu2003 ***@***.***> Date: Friday, July 5, 2024 at 7:30 AM To: ShouWenWang-Lab/snakemake_DARLIN ***@***.***> Cc: Subscribed ***@***.***> Subject: [ShouWenWang-Lab/snakemake_DARLIN] Inquiry about of Integrated Camellia-seq data joint profiling 4 kinds of data (Issue #9) Hi Dr. Wang, I have just read your paper "A mouse model with high clonal barcode diversity for joint lineage, transcriptomic, and epigenomic profifiling in single cells" and fairly interested in the Camellia-seq data. Is this data offered in this post? Could you give a guidance to find it? Thanks! — Reply to this email directly, view it on GitHub<#9>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ABDCASWZZL5RER7KMEKPARDZKXLHPAVCNFSM6AAAAABKMHCQ2CVHI2DSMVQWIX3LMV43ASLTON2WKOZSGM4TCNJUHEZDENA>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[Zhklu2003]

Thanks!
But I still puzzled with conncetions between files.

1. Why is there so many scATACseq as well as DNA methylation corresponding to one scRNA file?
   For example,
   Camellia-seq-lineage_LL744-P1-CC, Camellia_AGM-HSC_LL744EP1_RNA, Camellia_AGM-HSC_LL744EP1_DNA_A1(2,3,...11)

Are they the corresponding joint profile?

2. What does the TC/CC/RC,_rep mean? They appear in the file names of barcode information.

Could you give me some guidances or is there any introduction to how each file gets its name? Thanks a lot!!!