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Stamatoyannopoulos Lab

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  1. footprinting2012 footprinting2012 Public

    Forked from sjneph/footprinting2012

    DNaseI Footprinting

    C++ 4 1

  2. hotspot hotspot Public

    Forked from rthurman/hotspot

    Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.

    Shell 2 2

  3. modwt modwt Public

    Forked from sjneph/modwt

    An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, gsl but an extended set of algorithms designed to overcome some problems with the usual d…

    C++ 1 2

  4. bcl_barcode_count bcl_barcode_count Public

    tally barcodes from Illumina sequencing machines

    Go 1 2

  5. bedops bedops Public

    Forked from bedops/bedops

    BEDOPS: high-performance genomic feature operations

    C

  6. network-motifs network-motifs Public

    Forked from sjneph/network-motifs

    network-motifs

    C++

Repositories

Showing 10 of 12 repositories
  • stampipes Public

    This is a focused collection of makefiles and scripts for analysis on Illumina sample data.

    StamLab/stampipes’s past year of commit activity
    Python 0 10 3 9 Updated Oct 28, 2024
  • bcl_barcode_count Public

    tally barcodes from Illumina sequencing machines

    StamLab/bcl_barcode_count’s past year of commit activity
    Go 1 2 0 0 Updated Feb 28, 2021
  • picard-parser Public

    A parser for Picard output

    StamLab/picard-parser’s past year of commit activity
    Python 0 2 0 0 Updated Apr 2, 2020
  • stampipes_test_data Public

    Holds test data for stampipes

    StamLab/stampipes_test_data’s past year of commit activity
    0 0 0 0 Updated Sep 10, 2018
  • modwt Public Forked from sjneph/modwt

    An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.

    StamLab/modwt’s past year of commit activity
    C++ 1 7 0 0 Updated Jan 12, 2018
  • bedops Public Forked from bedops/bedops

    BEDOPS: high-performance genomic feature operations

    StamLab/bedops’s past year of commit activity
    C 0 60 0 0 Updated Dec 28, 2017
  • hotspot Public Forked from rthurman/hotspot

    Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.

    StamLab/hotspot’s past year of commit activity
    Shell 2 GPL-2.0 15 0 0 Updated May 12, 2017
  • hotspot2_deprecated Public

    A faster implementation of hotspot

    StamLab/hotspot2_deprecated’s past year of commit activity
    Shell 0 0 0 0 Updated Feb 9, 2016
  • network-motifs Public Forked from sjneph/network-motifs

    network-motifs

    StamLab/network-motifs’s past year of commit activity
    C++ 0 GPL-2.0 1 0 0 Updated Aug 20, 2015
  • footprinting2012 Public Forked from sjneph/footprinting2012

    DNaseI Footprinting

    StamLab/footprinting2012’s past year of commit activity
    C++ 4 GPL-2.0 3 0 0 Updated Jun 12, 2015
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