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Resume feature [NOT READY] #337

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wants to merge 14 commits into from
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Resume feature [NOT READY] #337

wants to merge 14 commits into from

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Fin109
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@Fin109 Fin109 commented May 15, 2020

  • Resume and Pause features added for: basic_tau_leaping_solver, basic_ode_solver, and NumPy ssa_solver

  • Needs much more stress testing, though have cleared up most (all?) bugs in currently completed solvers

TODO:
SSACSolver, basic_tau_hybrid_solver, remove print statements for testing, housekeeping

Fin109 added 12 commits May 12, 2020 15:02
…llesPy2/GillesPy2 into resumeFeature

� Conflicts:
�	gillespy2/solvers/numpy/basic_tau_hybrid_solver.py
�	gillespy2/solvers/numpy/ssa_solver.py
-Add pause/resume for basic_tau_leaping_solver.py
-Bugfixes for ssa_solver, basic_ode_solver.py, basic_tau_leaping_solver.py
-Add pause/resume for basic_tau_leaping_solver.py
-Bugfixes for ssa_solver, basic_ode_solver.py, basic_tau_leaping_solver.py
…and ssa_solver.py

-Fix t argument throwing error when user specified when running a model
-Remove out-dated parse_output method
@seanebum seanebum mentioned this pull request May 19, 2020
@Fin109 Fin109 closed this May 21, 2020
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