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Assemble sequences with multiple locations #106

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bbartley opened this issue Oct 25, 2019 · 2 comments
Open

Assemble sequences with multiple locations #106

bbartley opened this issue Oct 25, 2019 · 2 comments
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@tcmitchell @bbartley

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bbartley commented Oct 25, 2019 •
edited by jakebeal
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We can represent an insertion into a genome by giving two Location objects to describe where the old genome goes in the new genome. i.e., if we are putting in 2 kilobases starting at location 1001 in a length 10,000 genome, the Location assigned by a SequenceAnnotation to the Component would be Location is 1-1000 and Location is 3001-12000.

Right now, however, pySBOL will not stitch together the pieces correctly, when asked to assemble this sequence.
@bbartley bbartley mentioned this issue Oct 29, 2019
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@jakebeal jakebeal mentioned this issue Oct 29, 2019
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@tcmitchell tcmitchell self-assigned this Oct 30, 2019
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See SynBioDex/libSBOL#216

@tcmitchell tcmitchell mentioned this issue Nov 8, 2019
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@jakebeal jakebeal added this to the 2.3.3 milestone Nov 14, 2019
@bbartley bbartley removed this from the 2.3.3 milestone Dec 6, 2019
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bbartley commented Dec 6, 2019

Postponed from 2.3.3 milestone until later.

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