The repo contains:
- MATLAB script for the visualization of Genome-wide association analysis. All GWAS results in txt files are provided.
- MATLAB script for Heat Probe Assay data analysis and visualization. An example excel file (Example.xlsx) is provided.
- MATLAB scripts for Optogenetic behavioral assay data analysis and visualization.
- A support vector machine (SVM)-based custom program which perform the automatic analysis. See README file in the folder.
- A scirpt for maunal analysis. RUN Optogenetic_DataAnalysis. The excel file (ABLK_SELK_opto_activation_sum.xlsx) is provided.
- MATLAB scripts and Jupyter Notebook scripts for Calcium imaging data analysis and visualization.
It also contains:
- A custom software program written in LabVIEW which control the delivery of LED light pulses and to record behavioral responses 602 using a GE60 CCD imager (Library Co., Ltd, Tokyo, Japan)in optogenetic behavioral assays.
- A custom-written program written in Arduino which control the onset of the TTL pulse in optogenetic manipulation with the Heat Probe Assay.
- A custom-written program written in Arduino which control the onset of the TTL pulse in Calcium imaging.