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Teal Furnholm edited this page May 31, 2022
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These are an assortment of perl scripts that will generate highly curated meta-omics databases, including:
- taxonomy-phylogenic lineages
- biological compounds
- biological reactions
- protein functions
The UMRAD databases are as universal as can be reliably made, drawn from dozens of public data repositories, and spanning all kingdoms of life.
Get_BioCyc.pl Get_Function_Names.pl Convert_BioCyc_Monomers.pl Convert_Kegg_Genes.pl
Create_CPD-RXN-DB_BIOCYC.pl Create_CPD-RXN-DB_KEGG.pl Create_CPD-RXN-DB_OTHERDB.pl Create_CPD-RXN-DB_RHEA.pl
Merge_CPD_DB.pl
Create_Alignment_DB.pl