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  1. CITE-seq_optimization CITE-seq_optimization Public

    Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments

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  2. scutility scutility Public

    Utility functions for scRNA-seq focused on ECCITE-seq analysis

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  3. scvdj scvdj Public

    Package for analyzing VDJ (T-/B-cell receptor) clones in single-cell data

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  4. fcutility fcutility Public

    Utility functions for working with Flow Cytometry data in R

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  5. scfeaturerank scfeaturerank Public

    Feature Rank plot for single-cell analysis (developed for evaluation of (EC)CITE-seq optimizations).

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  6. multisce multisce Public

    Package for loading and separating multiple (alternative) experiments into smaller elements to provide more flexibility in loading and saving large highly multi-modal datasets

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