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@TheLaueLab

TheLaueLab

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  1. nuc_dynamics nuc_dynamics Public

    Forked from tjs23/nuc_dynamics

    Particle dynamics and simulated annealing for chromosome structure calculation

    Python 18 4

  2. genome_structure_analysis genome_structure_analysis Public

    Analysis code for population and single-cell Hi-C data. Includes functions for calculating "Void" regions, "A/B" compartments and spatial density enrichment.

    Jupyter Notebook 7 2

  3. nuc_processing nuc_processing Public

    Forked from tjs23/nuc_processing

    Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools

    Python 7 4

  4. blob-detection blob-detection Public

    Forked from kwohlfahrt/blob

    Python nD laplacian-of-gaussian blob detection

    Python 4 2

  5. nuc_frames nuc_frames Public

    Forked from latkins/NucFrames

    Utilities to help with analysing distances and depths in multiple single-cell Hi-C genome structures.

    Python 1

  6. point-alignment point-alignment Public

    Forked from kwohlfahrt/coherent-point-drift

    Python (partial) coherent point drift implementation

    Python 1

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