coding sequence MSA(multiple sequence alignment)
python single_msa.py --help
usage: single_msa.py [-h] [--msafile] [--cdsfile] [--transcode] [--output]
CDS MSA tool (sigle)
optional arguments:
-h, --help show this help message and exit
--msafile , -m inputfile path, it is a MSA output file (FASTA format)
--cdsfile , -c uncleotide sequence file (FASTA formfat)
--transcode , -t translate code file path, default='code.csv'
--output , -o output file path, CDS alignment file
python batch_msa.py --help
usage: batch_msa.py [-h] [--indir] [--cdsdir] [--transcode] [--outdir]
CDS MSA tool (batch)
optional arguments:
-h, --help show this help message and exit
--indir , -i input folder path, there are MSA output files (FASTA format)
--cdsdir , -c save uncleotide sequence files (FASTA formfat), have the
same name with input files
--transcode , -t translate code file path
--outdir , -o output dir path, save CDS alignment files