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Hello, I'm Tom Donoghue!

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I work research, in the area of computational and cognitive neuroscience. Below are some quick links to projects of interest.

You can also find information on my personal website, and/or check out a map of my work here on Github.

Open-Source Python Projects

Research Projects


  • SigViz: animated visualizers to for exploring digital signal processing [Site]
  • OpenLists: lists of openly available resources on a range of topics [Site]
  • StructuredScience: a collection of tools and resources for organized computational science [Site]



  1. Parameterizing neural power spectra into periodic & aperiodic components.

    Python 221 56

  2. Materials for Introduction to Python.

    Jupyter Notebook 46 27

  3. Digital signal processing for neural time series.

    Python 200 48

  4. Overview and map of the organization, for the UCSD course COGS108: Data Science in Practice.

    111 120

  5. Literature Scanner: Automated collection & analyses of the scientific literature.

    Python 61 8

  6. An overview of the OpenLists organization, and description of the available lists.


2,076 contributions in the last year

May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Mon Wed Fri

Contribution activity

May 2022

Created a pull request in spiketools/spiketools that received 3 comments

[WIP] - Update spatial analyses & utilities for better consistencty / alignment

This PR responds to #106 It does a sweep through space related functionality, in particular spiketools/spatial/occupancy and does a series of updat…

+353 −269 3 comments
Reviewed 1 pull request in 1 repository
spiketools/spiketools 1 pull request

Created an issue in spiketools/spiketools that received 1 comment

Alignment between spatial representations

We are currently not guaranteed to create and plot different spatial representations in the same orientation - meaning, for example, that computing…

1 comment
Opened 5 other issues in 4 repositories
spiketools/spiketools 2 open
openlists/DSPResources 1 open
openlists/OtherLists 1 open
openlists/MathStatsResources 1 open
24 contributions in private repositories May 2 – May 24

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